Expression of 1-1-7.2.20.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.890660.427
27DAP/17DAP0.92710.86
39DAP/27DAP1.16110.961
41DAP/39DAP1.032261
42DAP/41DAP1.210250.786
43DAP/42DAP1.061511
47DAP/43DAP0.956570.821
52DAP/47DAP1.060750.973
57DAP/52DAP1.320950.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008911
17DAP/reference0.859210.057
27DAP/reference0.92810.223
39DAP/reference1.085810.434
41DAP/reference0.900960.201
42DAP/reference0.95190.218
43DAP/reference0.930580.331
47DAP/reference0.934650.06
52DAP/reference1.037860.951
57DAP/reference1.033320.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.874260.442
27DAP/17DAP1.011710.968
39DAP/27DAP0.808310.154
41DAP/39DAP2.239260.011
42DAP/41DAP0.807550.155
43DAP/42DAP1.307670.03
47DAP/43DAP1.369570.039
52DAP/47DAP0.872230.491
57DAP/52DAP1.606920.041
57DAP/7DAP1.37097

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.412410.028
17DAP/reference1.844310.006
27DAP/reference1.977020.006
39DAP/reference2.344910.006
41DAP/reference2.191730.019
42DAP/reference2.172230.006
43DAP/reference2.044150.007
47DAP/reference1.545870.031
52DAP/reference2.058610.007
57DAP/reference2.11910.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.928540.399
17DAP/reference0.701240.004
27DAP/reference0.846010.081
39DAP/reference0.937170.25
41DAP/reference1.009320.749
42DAP/reference0.979270.433
43DAP/reference0.908270.352
47DAP/reference0.949270.284
52DAP/reference0.962050.38
57DAP/reference0.867210.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.554460.031
17DAP/reference1.138820.602
27DAP/reference1.587130.023
39DAP/reference1.520390.013
41DAP/reference1.67030.018
42DAP/reference1.602270.029
43DAP/reference1.749760.094
47DAP/reference0.969930.465
52DAP/reference1.760010.073
57DAP/reference1.354830.324

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.305970.966
26DAP/20DAP1.222350.562
34DAP/26DAP1.07631
51DAP/34DAP1.030670.937
52DAP/51DAP1.04090.848
53DAP/52DAP0.953610.817
55DAP/53DAP1.61060.927
57DAP/55DAP1.162550.865
62DAP/57DAP1.186490.767
68DAP/62DAP1.344150.259
68DAP/14DAP1.745380.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.058220.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.883150.539
Mature Green Tomato/Ripe Tomato1.056691
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.267590.224
Mature Eggplant/Ripe Tomato0.355460.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.135151
1-1-2/M821.26534
12-2/M822.353680.356
12-4/M821.008811
1-3/M821.2001
2-1-1/M820.95694
2-1/M820.934930.322
2-6/M821.261820.339
3-2/M821.68701
4-1-1/M821.303091
4-1/M821.49039
4-3-2/M821.07276
4-3/M821.59811
5-3/M820.503660.447
6-2/M822.605871
6-3/M820.835240.982
7-1/M820.96998
7-2/M821.141551
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.231160.277
IL2-6/WTpooled1.265970.395
IL7-5/WTpooled1.166610.635
IL7-3/WTpooled1.214531
IL12-4/WTpooled1.039140.673
IL1-4/WTpooled0.914420.476
WT/WTpooled0.989851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.217391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055360.921
DC3000/delta hrp 6h1.32630.95
DC3000/delta hrp 12h1.188241
DC3000/delta hrp 24h1.302960.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.828320.042
DC3000 delta B/DC3000 delta AB2.14457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.186371
Exp 36h2.169340.326
Exp 60h2.562070.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9391
Var 0hN/AN/A
Var 12h I row2-row10.840550.627
Var 12h NI row2-row11.951410.649
Var 36h I row2-row11.037741
Var 36h NI row2-row10.957010.791
Var 60h I row2-row11.00231
Var 60h NI row2-row10.766620.292
Time course 0hI-0hNI1.103810.63
Time course 12hI-12hNI1.036390.836
Time course 36hI-36hNI7.017230.004
Time course 60hI-60hNI11.3730.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.773850.408
transgenic ySAMdc/azygous control (breaker)2.492320.248
transgenic ySAMdc/azygous control (red)1.16420.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006190.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.544820.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.905121
Manapal/WT (break)0.482360.333
Manapal/WT (red)0.241780.181