Expression of 1-1-7.2.20.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.817020.101
27DAP/17DAP1.135170.892
39DAP/27DAP1.080390.798
41DAP/39DAP0.896470.555
42DAP/41DAP1.177060.863
43DAP/42DAP1.13180.831
47DAP/43DAP1.111610.909
52DAP/47DAP0.874080.654
57DAP/52DAP1.22910.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.070.928
17DAP/reference1.30910.013
27DAP/reference0.977660.595
39DAP/reference1.096540.214
41DAP/reference1.222280.265
42DAP/reference1.1782
43DAP/reference0.908670.464
47DAP/reference0.90197
52DAP/reference0.953660.475
57DAP/reference1.48728

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.233770.34
27DAP/17DAP0.964340.878
39DAP/27DAP1.21450.478
41DAP/39DAP1.028811
42DAP/41DAP1.001890.853
43DAP/42DAP0.972220.774
47DAP/43DAP1.048381
52DAP/47DAP1.413660.343
57DAP/52DAP1.454610.276
57DAP/7DAP1.124491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0950.761
17DAP/reference1.096940.361
27DAP/reference0.984270.53
39DAP/reference0.829790.064
41DAP/reference0.74570.043
42DAP/reference0.758450.055
43DAP/reference0.886050.166
47DAP/reference0.870350.168
52DAP/reference0.982250.571
57DAP/reference1.062610.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996010.786
17DAP/reference0.89720.223
27DAP/reference0.687450.048
39DAP/reference0.908710.306
41DAP/reference1.141160.666
42DAP/reference0.939590.594
43DAP/reference0.975280.633
47DAP/reference1.21767
52DAP/reference1.002681
57DAP/reference1.029240.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036721
17DAP/reference0.878060.281
27DAP/reference0.96810.516
39DAP/reference1.041320.528
41DAP/reference1.01671
42DAP/reference0.918380.361
43DAP/reference1.007821
47DAP/reference1.002030.708
52DAP/reference1.688440.172
57DAP/reference1.246360.66

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056240.966
26DAP/20DAP0.797110.317
34DAP/26DAP1.383461
51DAP/34DAP1.128760.949
52DAP/51DAP1.685340.048
53DAP/52DAP0.904580.535
55DAP/53DAP1.080710.991
57DAP/55DAP1.054810.898
62DAP/57DAP1.117010.902
68DAP/62DAP1.351390.305
68DAP/14DAP1.082721

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.417190.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.704490.203
Mature Green Tomato/Ripe Tomato0.976570.835
Immature Eggplant/Mature Eggplant1.017130.58
Ripe Pepper/Ripe Tomato0.781141
Mature Eggplant/Ripe Tomato0.903781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.938830.944
1-1-2/M820.901390.958
12-2/M821.086851
12-4/M820.934710.358
1-3/M820.932810.378
2-1-1/M820.991440.784
2-1/M820.982611
2-6/M821.660570.385
3-2/M821.2334
4-1-1/M821.02921
4-1/M821.00481
4-3-2/M821.117261
4-3/M821.014311
5-3/M821.018831
6-2/M821.079941
6-3/M821.065151
7-1/M820.988231
7-2/M820.988041
9-3-2/M821.41935

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.29143
IL2-6/WTpooled1.014581
IL7-5/WTpooled1.36421
IL7-3/WTpooled1.122951
IL12-4/WTpooled1.04590.695
IL1-4/WTpooled0.945450.562
WT/WTpooled1.000131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.28489

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.045441
DC3000/delta hrp 12h1.09611
DC3000/delta hrp 24h0.673210.455

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.171431
Exp 36h1.07731
Exp 60h1.18470.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987161
Var 0hN/AN/A
Var 12h I row2-row10.900060.565
Var 12h NI row2-row11.142250.649
Var 36h I row2-row11.054481
Var 36h NI row2-row10.455960.645
Var 60h I row2-row10.938420.439
Var 60h NI row2-row10.902570.977
Time course 0hI-0hNI0.905340.606
Time course 12hI-12hNI0.862950.442
Time course 36hI-36hNI1.027220.975
Time course 60hI-60hNI9.799880.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024290.541
transgenic ySAMdc/azygous control (breaker)1.030921
transgenic ySAMdc/azygous control (red)1.02661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986870.517

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.731080.172
Manapal/WT (break)0.819861
Manapal/WT (red)0.573190.181