Expression of 1-1-7.2.3.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40335 | 0.932 |
27DAP/17DAP | 1.07665 | 0.86 |
39DAP/27DAP | 1.28443 | 0.285 |
41DAP/39DAP | 0.82731 | 0.33 |
42DAP/41DAP | 1.25952 | 0.488 |
43DAP/42DAP | 1.12097 | 1 |
47DAP/43DAP | 0.9572 | 0.835 |
52DAP/47DAP | 1.07855 | 0.906 |
57DAP/52DAP | 1.12107 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8814 | 0.106 |
17DAP/reference | 0.82501 | 0.013 |
27DAP/reference | 0.9757 | 0.668 |
39DAP/reference | 0.90585 | 0.066 |
41DAP/reference | 0.77746 | 0.018 |
42DAP/reference | 0.95523 | 0.134 |
43DAP/reference | 0.92404 | 0.2 |
47DAP/reference | 1.03503 | 0.541 |
52DAP/reference | 1.09601 | 0.951 |
57DAP/reference | 1.2438 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76416 | 0.135 |
27DAP/17DAP | 1.00107 | 0.969 |
39DAP/27DAP | 1.30693 | 0.135 |
41DAP/39DAP | 0.99617 | 1 |
42DAP/41DAP | 1.02083 | 0.976 |
43DAP/42DAP | 1.25189 | 0.066 |
47DAP/43DAP | 0.98247 | 0.919 |
52DAP/47DAP | 0.84421 | 0.357 |
57DAP/52DAP | 0.85136 | 0.422 |
57DAP/7DAP | 0.83907 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22863 | 0.061 |
17DAP/reference | 1.0943 | 0.147 |
27DAP/reference | 1.14521 | 0.131 |
39DAP/reference | 1.45984 | 0.006 |
41DAP/reference | 1.17684 | 0.072 |
42DAP/reference | 1.57715 | 0.009 |
43DAP/reference | 1.44969 | 0.031 |
47DAP/reference | 1.15996 | 0.165 |
52DAP/reference | 1.37444 | 0.007 |
57DAP/reference | 1.40451 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91365 | 0.238 |
17DAP/reference | 0.85751 | 0.068 |
27DAP/reference | 1.08136 | 0.745 |
39DAP/reference | 1.06208 | 1 |
41DAP/reference | 1.09127 | 1 |
42DAP/reference | 0.99371 | 0.655 |
43DAP/reference | 0.9164 | 0.292 |
47DAP/reference | 0.88485 | 0.048 |
52DAP/reference | 0.90337 | 0.093 |
57DAP/reference | 0.82199 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08255 | 0.709 |
17DAP/reference | 1.00919 | 0.87 |
27DAP/reference | 1.12398 | 0.325 |
39DAP/reference | 1.21608 | 0.189 |
41DAP/reference | 1.2301 | 0.018 |
42DAP/reference | 1.32345 | 0.036 |
43DAP/reference | 1.47948 | 0.025 |
47DAP/reference | 0.9232 | 0.24 |
52DAP/reference | 1.33689 | 0.205 |
57DAP/reference | 1.63466 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.7215 | 0.121 |
26DAP/20DAP | 1.35724 | |
34DAP/26DAP | 0.93271 | 0.509 |
51DAP/34DAP | 0.7003 | 0.193 |
52DAP/51DAP | 0.60567 | 0.151 |
53DAP/52DAP | 0.95275 | 0.797 |
55DAP/53DAP | 1.10511 | 0.764 |
57DAP/55DAP | 0.8437 | 0.398 |
62DAP/57DAP | 2.03253 | 0.902 |
68DAP/62DAP | 1.84169 | 0.616 |
68DAP/14DAP | 2.38805 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.19535 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89354 | 0.41 |
Mature Green Tomato/Ripe Tomato | 0.88633 | 0.522 |
Immature Eggplant/Mature Eggplant | 0.79167 | 0.105 |
Ripe Pepper/Ripe Tomato | 1.0269 | 1 |
Mature Eggplant/Ripe Tomato | 0.36464 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1011 | 0.877 |
1-1-2/M82 | 1.19465 | 1 |
12-2/M82 | 0.91614 | 0.955 |
12-4/M82 | 1.1251 | 1 |
1-3/M82 | 1.56988 | 0.277 |
2-1-1/M82 | 1.11998 | 1 |
2-1/M82 | 0.72375 | |
2-6/M82 | 1.43335 | 0.425 |
3-2/M82 | 1.25174 | 0.463 |
4-1-1/M82 | 1.43596 | 0.977 |
4-1/M82 | 1.46215 | 1 |
4-3-2/M82 | 1.53043 | 0.508 |
4-3/M82 | 1.43875 | 0.268 |
5-3/M82 | 1.15745 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.13006 | 1 |
7-1/M82 | 1.18361 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.48064 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04949 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07069 | 0.921 |
DC3000/delta hrp 6h | 1.07745 | 1 |
DC3000/delta hrp 12h | 0.98157 | 1 |
DC3000/delta hrp 24h | 1.0063 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.53661 | |
DC3000 delta B/DC3000 delta AB | 1.15364 | 0.477 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9818 | 1 |
Exp 36h | 0.93772 | 0.879 |
Exp 60h | 0.9396 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.6046 | 0.594 |
Var 12h I row2-row1 | 0.80538 | 0.77 |
Var 12h NI row2-row1 | 0.91089 | 0.82 |
Var 36h I row2-row1 | 1.34189 | 0.283 |
Var 36h NI row2-row1 | 1.12256 | 1 |
Var 60h I row2-row1 | 0.57022 | |
Var 60h NI row2-row1 | 0.88206 | 0.572 |
Time course 0hI-0hNI | 0.96815 | 0.945 |
Time course 12hI-12hNI | 0.95599 | 0.855 |
Time course 36hI-36hNI | 1.04379 | 0.881 |
Time course 60hI-60hNI | 1.32832 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05273 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.15068 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08313 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05901 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77117 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01134 | 1 |
Manapal/WT (break) | 1.03015 | 1 |
Manapal/WT (red) | 1.04936 | 0.125 |
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