Expression of 1-1-7.2.7.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.514890.09
27DAP/17DAP0.8840.725
39DAP/27DAP1.63590.206
41DAP/39DAP0.565130.045
42DAP/41DAP0.973731
43DAP/42DAP1.136220.968
47DAP/43DAP0.736810.242
52DAP/47DAP1.042641
57DAP/52DAP1.246940.746

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.707620.047
17DAP/reference0.592260.015
27DAP/reference0.791920.098
39DAP/reference0.594120.012
41DAP/reference0.541240.008
42DAP/reference0.77290.004
43DAP/reference0.595380.013
47DAP/reference1.007830.636
52DAP/reference1.081450.663
57DAP/reference0.932390.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.619340.036
27DAP/17DAP0.818030.363
39DAP/27DAP0.746110.113
41DAP/39DAP1.106620.883
42DAP/41DAP1.04290.902
43DAP/42DAP0.879640.181
47DAP/43DAP0.972010.896
52DAP/47DAP0.94980.893
57DAP/52DAP0.91540.221
57DAP/7DAP0.548831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.852860.168
17DAP/reference0.678030.012
27DAP/reference0.564830.011
39DAP/reference0.445320.011
41DAP/reference0.415370.009
42DAP/reference0.558260.01
43DAP/reference0.383040.009
47DAP/reference0.655670.079
52DAP/reference0.473190.01
57DAP/reference0.545840.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.449270.007
17DAP/reference0.794970.095
27DAP/reference1.022040.79
39DAP/reference0.836580.147
41DAP/reference0.753880.027
42DAP/reference0.833460.035
43DAP/reference0.538730.007
47DAP/reference0.79810.038
52DAP/reference0.458760.003
57DAP/reference0.569850.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.402160.017
17DAP/reference1.401070.169
27DAP/reference0.937870.397
39DAP/reference0.791590.016
41DAP/reference0.552760.021
42DAP/reference0.616590.036
43DAP/reference0.747060.098
47DAP/reference0.762260.097
52DAP/reference0.69840.145
57DAP/reference2.160340.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.002661
26DAP/20DAP1.042151
34DAP/26DAP0.923140.771
51DAP/34DAP0.804150.104
52DAP/51DAP0.873241
53DAP/52DAP0.789020.179
55DAP/53DAP0.851270.091
57DAP/55DAP1.032631
62DAP/57DAP1.085830.8
68DAP/62DAP1.435330.019
68DAP/14DAP1.068870.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.354810.212

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.058850.058
Mature Green Tomato/Ripe Tomato1.884150.267
Immature Eggplant/Mature Eggplant0.826070.071
Ripe Pepper/Ripe Tomato0.78870.224
Mature Eggplant/Ripe Tomato5.915580.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.323760.591
1-1-2/M821.075230.977
12-2/M820.594920.678
12-4/M821.097561
1-3/M820.950510.441
2-1-1/M820.671560.465
2-1/M82N/AN/A
2-6/M820.955351
3-2/M821.040430.426
4-1-1/M820.93985
4-1/M821.906320.853
4-3-2/M821.262810.284
4-3/M820.904770.551
5-3/M821.621250.572
6-2/M82N/AN/A
6-3/M821.09383
7-1/M820.8858
7-2/M821.14633
9-3-2/M820.892620.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.95640.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.996831
DC3000/delta hrp 6h1.06361
DC3000/delta hrp 12h1.087231
DC3000/delta hrp 24h0.956080.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.7838
DC3000 delta B/DC3000 delta AB0.426950.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9781
Var 0h0.760851
Var 12h I row2-row10.824860.39
Var 12h NI row2-row10.942260.713
Var 36h I row2-row10.865490.805
Var 36h NI row2-row11.142261
Var 60h I row2-row11.279710.543
Var 60h NI row2-row11.093710.904
Time course 0hI-0hNI0.994071
Time course 12hI-12hNI1.009180.868
Time course 36hI-36hNI0.982670.569
Time course 60hI-60hNI0.28680.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.041380.798
transgenic ySAMdc/azygous control (breaker)0.866660.49
transgenic ySAMdc/azygous control (red)0.836561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.724130.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.119210.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.886530.096
Manapal/WT (break)1.263320.381
Manapal/WT (red)1.46191