Expression of 1-1-7.2.7.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51489 | 0.09 |
27DAP/17DAP | 0.884 | 0.725 |
39DAP/27DAP | 1.6359 | 0.206 |
41DAP/39DAP | 0.56513 | 0.045 |
42DAP/41DAP | 0.97373 | 1 |
43DAP/42DAP | 1.13622 | 0.968 |
47DAP/43DAP | 0.73681 | 0.242 |
52DAP/47DAP | 1.04264 | 1 |
57DAP/52DAP | 1.24694 | 0.746 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70762 | 0.047 |
17DAP/reference | 0.59226 | 0.015 |
27DAP/reference | 0.79192 | 0.098 |
39DAP/reference | 0.59412 | 0.012 |
41DAP/reference | 0.54124 | 0.008 |
42DAP/reference | 0.7729 | 0.004 |
43DAP/reference | 0.59538 | 0.013 |
47DAP/reference | 1.00783 | 0.636 |
52DAP/reference | 1.08145 | 0.663 |
57DAP/reference | 0.93239 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.61934 | 0.036 |
27DAP/17DAP | 0.81803 | 0.363 |
39DAP/27DAP | 0.74611 | 0.113 |
41DAP/39DAP | 1.10662 | 0.883 |
42DAP/41DAP | 1.0429 | 0.902 |
43DAP/42DAP | 0.87964 | 0.181 |
47DAP/43DAP | 0.97201 | 0.896 |
52DAP/47DAP | 0.9498 | 0.893 |
57DAP/52DAP | 0.9154 | 0.221 |
57DAP/7DAP | 0.54883 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85286 | 0.168 |
17DAP/reference | 0.67803 | 0.012 |
27DAP/reference | 0.56483 | 0.011 |
39DAP/reference | 0.44532 | 0.011 |
41DAP/reference | 0.41537 | 0.009 |
42DAP/reference | 0.55826 | 0.01 |
43DAP/reference | 0.38304 | 0.009 |
47DAP/reference | 0.65567 | 0.079 |
52DAP/reference | 0.47319 | 0.01 |
57DAP/reference | 0.54584 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.44927 | 0.007 |
17DAP/reference | 0.79497 | 0.095 |
27DAP/reference | 1.02204 | 0.79 |
39DAP/reference | 0.83658 | 0.147 |
41DAP/reference | 0.75388 | 0.027 |
42DAP/reference | 0.83346 | 0.035 |
43DAP/reference | 0.53873 | 0.007 |
47DAP/reference | 0.7981 | 0.038 |
52DAP/reference | 0.45876 | 0.003 |
57DAP/reference | 0.56985 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40216 | 0.017 |
17DAP/reference | 1.40107 | 0.169 |
27DAP/reference | 0.93787 | 0.397 |
39DAP/reference | 0.79159 | 0.016 |
41DAP/reference | 0.55276 | 0.021 |
42DAP/reference | 0.61659 | 0.036 |
43DAP/reference | 0.74706 | 0.098 |
47DAP/reference | 0.76226 | 0.097 |
52DAP/reference | 0.6984 | 0.145 |
57DAP/reference | 2.16034 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00266 | 1 |
26DAP/20DAP | 1.04215 | 1 |
34DAP/26DAP | 0.92314 | 0.771 |
51DAP/34DAP | 0.80415 | 0.104 |
52DAP/51DAP | 0.87324 | 1 |
53DAP/52DAP | 0.78902 | 0.179 |
55DAP/53DAP | 0.85127 | 0.091 |
57DAP/55DAP | 1.03263 | 1 |
62DAP/57DAP | 1.08583 | 0.8 |
68DAP/62DAP | 1.43533 | 0.019 |
68DAP/14DAP | 1.06887 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35481 | 0.212 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.05885 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.88415 | 0.267 |
Immature Eggplant/Mature Eggplant | 0.82607 | 0.071 |
Ripe Pepper/Ripe Tomato | 0.7887 | 0.224 |
Mature Eggplant/Ripe Tomato | 5.91558 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.32376 | 0.591 |
1-1-2/M82 | 1.07523 | 0.977 |
12-2/M82 | 0.59492 | 0.678 |
12-4/M82 | 1.09756 | 1 |
1-3/M82 | 0.95051 | 0.441 |
2-1-1/M82 | 0.67156 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.95535 | 1 |
3-2/M82 | 1.04043 | 0.426 |
4-1-1/M82 | 0.93985 | |
4-1/M82 | 1.90632 | 0.853 |
4-3-2/M82 | 1.26281 | 0.284 |
4-3/M82 | 0.90477 | 0.551 |
5-3/M82 | 1.62125 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.09383 | |
7-1/M82 | 0.8858 | |
7-2/M82 | 1.14633 | |
9-3-2/M82 | 0.89262 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9564 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99683 | 1 |
DC3000/delta hrp 6h | 1.0636 | 1 |
DC3000/delta hrp 12h | 1.08723 | 1 |
DC3000/delta hrp 24h | 0.95608 | 0.607 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.7838 | |
DC3000 delta B/DC3000 delta AB | 0.42695 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.978 | 1 |
Var 0h | 0.76085 | 1 |
Var 12h I row2-row1 | 0.82486 | 0.39 |
Var 12h NI row2-row1 | 0.94226 | 0.713 |
Var 36h I row2-row1 | 0.86549 | 0.805 |
Var 36h NI row2-row1 | 1.14226 | 1 |
Var 60h I row2-row1 | 1.27971 | 0.543 |
Var 60h NI row2-row1 | 1.09371 | 0.904 |
Time course 0hI-0hNI | 0.99407 | 1 |
Time course 12hI-12hNI | 1.00918 | 0.868 |
Time course 36hI-36hNI | 0.98267 | 0.569 |
Time course 60hI-60hNI | 0.2868 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04138 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.86666 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.83656 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.72413 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.11921 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.88653 | 0.096 |
Manapal/WT (break) | 1.26332 | 0.381 |
Manapal/WT (red) | 1.4619 | 1 |
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