Expression of 1-1-7.2.9.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226710.534
27DAP/17DAP0.986860.885
39DAP/27DAP0.865260.458
41DAP/39DAP1.138130.753
42DAP/41DAP1.060011
43DAP/42DAP0.898060.815
47DAP/43DAP1.137670.95
52DAP/47DAP1.524340.403
57DAP/52DAP1.125540.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.201210.05
17DAP/reference1.102230.148
27DAP/reference0.963130.514
39DAP/reference1.204110.051
41DAP/reference1.158940.145
42DAP/reference1.064660.467
43DAP/reference1.129780.126
47DAP/reference1.035150.91
52DAP/reference1.057370.695
57DAP/reference0.820740.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995990.782
27DAP/17DAP1.048970.887
39DAP/27DAP0.990630.984
41DAP/39DAP1.105150.362
42DAP/41DAP0.801620.037
43DAP/42DAP0.899390.503
47DAP/43DAP0.947520.696
52DAP/47DAP0.847020.24
57DAP/52DAP0.86360.264
57DAP/7DAP1.782751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88494
17DAP/reference0.982920.518
27DAP/reference0.888450.066
39DAP/reference0.933180.264
41DAP/reference0.813810.044
42DAP/reference0.631830.01
43DAP/reference0.861810.121
47DAP/reference0.983530.671
52DAP/reference1.077830.781
57DAP/reference0.868010.047

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.221240.141
17DAP/reference1.692770.014
27DAP/reference1.404190.023
39DAP/reference1.25750.15
41DAP/reference1.173310.427
42DAP/reference1.213610.079
43DAP/reference1.500910.111
47DAP/reference1.194640.232
52DAP/reference1.451370.007
57DAP/reference1.485980.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.074930.882
17DAP/reference1.188870.168
27DAP/reference0.914080.302
39DAP/reference1.036450.792
41DAP/reference1.153360.588
42DAP/reference0.936530.361
43DAP/reference1.03151
47DAP/reference1.1950.093
52DAP/reference1.320440.225
57DAP/reference1.010040.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.968691
26DAP/20DAP1.318130.168
34DAP/26DAP0.845650.898
51DAP/34DAP0.8487
52DAP/51DAP0.828541
53DAP/52DAP1.026161
55DAP/53DAP0.834210.577
57DAP/55DAP1.364470.222
62DAP/57DAP0.948070.994
68DAP/62DAP0.834060.144
68DAP/14DAP0.768411

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.822750.064

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.03812
Mature Green Tomato/Ripe Tomato0.707960.165
Immature Eggplant/Mature Eggplant1.18002
Ripe Pepper/Ripe Tomato0.446050.293
Mature Eggplant/Ripe Tomato0.921941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.003761
1-1-2/M820.84491
12-2/M82N/AN/A
12-4/M821.069351
1-3/M820.96393
2-1-1/M821.01092
2-1/M82N/AN/A
2-6/M821.126440.364
3-2/M821.12594
4-1-1/M821.147710.874
4-1/M820.88399
4-3-2/M821.05103
4-3/M820.88681
5-3/M820.930490.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.90259
7-2/M821.01884
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.965341
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.138191
IL12-4/WTpooled1.041890.839
IL1-4/WTpooled0.932390.834
WT/WTpooled0.960341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.162050.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988541
DC3000/delta hrp 6h1.156891
DC3000/delta hrp 12h1.047041
DC3000/delta hrp 24h1.10040.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.49924
DC3000 delta B/DC3000 delta AB1.142060.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.035480.254
Exp 36h1.275720.489
Exp 60h1.394350.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008061
Var 0h9.164740.98
Var 12h I row2-row11.043810.736
Var 12h NI row2-row10.918870.906
Var 36h I row2-row11.189120.298
Var 36h NI row2-row10.729550.329
Var 60h I row2-row11.498220.562
Var 60h NI row2-row10.756840.292
Time course 0hI-0hNI0.898830.265
Time course 12hI-12hNI1.131010.385
Time course 36hI-36hNI1.157750.401
Time course 60hI-60hNI1.192980.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.070180.305
transgenic ySAMdc/azygous control (breaker)1.023471
transgenic ySAMdc/azygous control (red)1.003411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.949470.104

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.789720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.054940.307
Manapal/WT (break)1.101271
Manapal/WT (red)1.094581