Expression of 1-1-7.2.9.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22671 | 0.534 |
27DAP/17DAP | 0.98686 | 0.885 |
39DAP/27DAP | 0.86526 | 0.458 |
41DAP/39DAP | 1.13813 | 0.753 |
42DAP/41DAP | 1.06001 | 1 |
43DAP/42DAP | 0.89806 | 0.815 |
47DAP/43DAP | 1.13767 | 0.95 |
52DAP/47DAP | 1.52434 | 0.403 |
57DAP/52DAP | 1.12554 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20121 | 0.05 |
17DAP/reference | 1.10223 | 0.148 |
27DAP/reference | 0.96313 | 0.514 |
39DAP/reference | 1.20411 | 0.051 |
41DAP/reference | 1.15894 | 0.145 |
42DAP/reference | 1.06466 | 0.467 |
43DAP/reference | 1.12978 | 0.126 |
47DAP/reference | 1.03515 | 0.91 |
52DAP/reference | 1.05737 | 0.695 |
57DAP/reference | 0.82074 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99599 | 0.782 |
27DAP/17DAP | 1.04897 | 0.887 |
39DAP/27DAP | 0.99063 | 0.984 |
41DAP/39DAP | 1.10515 | 0.362 |
42DAP/41DAP | 0.80162 | 0.037 |
43DAP/42DAP | 0.89939 | 0.503 |
47DAP/43DAP | 0.94752 | 0.696 |
52DAP/47DAP | 0.84702 | 0.24 |
57DAP/52DAP | 0.8636 | 0.264 |
57DAP/7DAP | 1.78275 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88494 | |
17DAP/reference | 0.98292 | 0.518 |
27DAP/reference | 0.88845 | 0.066 |
39DAP/reference | 0.93318 | 0.264 |
41DAP/reference | 0.81381 | 0.044 |
42DAP/reference | 0.63183 | 0.01 |
43DAP/reference | 0.86181 | 0.121 |
47DAP/reference | 0.98353 | 0.671 |
52DAP/reference | 1.07783 | 0.781 |
57DAP/reference | 0.86801 | 0.047 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22124 | 0.141 |
17DAP/reference | 1.69277 | 0.014 |
27DAP/reference | 1.40419 | 0.023 |
39DAP/reference | 1.2575 | 0.15 |
41DAP/reference | 1.17331 | 0.427 |
42DAP/reference | 1.21361 | 0.079 |
43DAP/reference | 1.50091 | 0.111 |
47DAP/reference | 1.19464 | 0.232 |
52DAP/reference | 1.45137 | 0.007 |
57DAP/reference | 1.48598 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07493 | 0.882 |
17DAP/reference | 1.18887 | 0.168 |
27DAP/reference | 0.91408 | 0.302 |
39DAP/reference | 1.03645 | 0.792 |
41DAP/reference | 1.15336 | 0.588 |
42DAP/reference | 0.93653 | 0.361 |
43DAP/reference | 1.0315 | 1 |
47DAP/reference | 1.195 | 0.093 |
52DAP/reference | 1.32044 | 0.225 |
57DAP/reference | 1.01004 | 0.902 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96869 | 1 |
26DAP/20DAP | 1.31813 | 0.168 |
34DAP/26DAP | 0.84565 | 0.898 |
51DAP/34DAP | 0.8487 | |
52DAP/51DAP | 0.82854 | 1 |
53DAP/52DAP | 1.02616 | 1 |
55DAP/53DAP | 0.83421 | 0.577 |
57DAP/55DAP | 1.36447 | 0.222 |
62DAP/57DAP | 0.94807 | 0.994 |
68DAP/62DAP | 0.83406 | 0.144 |
68DAP/14DAP | 0.76841 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.82275 | 0.064 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03812 | |
Mature Green Tomato/Ripe Tomato | 0.70796 | 0.165 |
Immature Eggplant/Mature Eggplant | 1.18002 | |
Ripe Pepper/Ripe Tomato | 0.44605 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.92194 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00376 | 1 |
1-1-2/M82 | 0.84491 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.06935 | 1 |
1-3/M82 | 0.96393 | |
2-1-1/M82 | 1.01092 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.12644 | 0.364 |
3-2/M82 | 1.12594 | |
4-1-1/M82 | 1.14771 | 0.874 |
4-1/M82 | 0.88399 | |
4-3-2/M82 | 1.05103 | |
4-3/M82 | 0.8868 | 1 |
5-3/M82 | 0.93049 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.90259 | |
7-2/M82 | 1.01884 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.96534 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.13819 | 1 |
IL12-4/WTpooled | 1.04189 | 0.839 |
IL1-4/WTpooled | 0.93239 | 0.834 |
WT/WTpooled | 0.96034 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16205 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98854 | 1 |
DC3000/delta hrp 6h | 1.15689 | 1 |
DC3000/delta hrp 12h | 1.04704 | 1 |
DC3000/delta hrp 24h | 1.1004 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.49924 | |
DC3000 delta B/DC3000 delta AB | 1.14206 | 0.484 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03548 | 0.254 |
Exp 36h | 1.27572 | 0.489 |
Exp 60h | 1.39435 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00806 | 1 |
Var 0h | 9.16474 | 0.98 |
Var 12h I row2-row1 | 1.04381 | 0.736 |
Var 12h NI row2-row1 | 0.91887 | 0.906 |
Var 36h I row2-row1 | 1.18912 | 0.298 |
Var 36h NI row2-row1 | 0.72955 | 0.329 |
Var 60h I row2-row1 | 1.49822 | 0.562 |
Var 60h NI row2-row1 | 0.75684 | 0.292 |
Time course 0hI-0hNI | 0.89883 | 0.265 |
Time course 12hI-12hNI | 1.13101 | 0.385 |
Time course 36hI-36hNI | 1.15775 | 0.401 |
Time course 60hI-60hNI | 1.19298 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07018 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.02347 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00341 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94947 | 0.104 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78972 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05494 | 0.307 |
Manapal/WT (break) | 1.10127 | 1 |
Manapal/WT (red) | 1.09458 | 1 |
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