Expression of 1-1-7.2.9.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14531 | 0.76 |
27DAP/17DAP | 1.54464 | 0.836 |
39DAP/27DAP | 1.08213 | 0.733 |
41DAP/39DAP | 0.62872 | 0.154 |
42DAP/41DAP | 0.81061 | 1 |
43DAP/42DAP | 1.11197 | 1 |
47DAP/43DAP | 1.12628 | 1 |
52DAP/47DAP | 0.8557 | 0.623 |
57DAP/52DAP | 2.20841 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82665 | 0.132 |
17DAP/reference | 1.31308 | 0.028 |
27DAP/reference | 1.28994 | 0.405 |
39DAP/reference | 1.0194 | 1 |
41DAP/reference | 1.04058 | 0.91 |
42DAP/reference | 1.22426 | 0.05 |
43DAP/reference | 1.10858 | 0.678 |
47DAP/reference | 1.15056 | 0.524 |
52DAP/reference | 1.28652 | 0.524 |
57DAP/reference | 0.95491 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97812 | 0.801 |
27DAP/17DAP | 1.78847 | 0.079 |
39DAP/27DAP | 0.56788 | 0.045 |
41DAP/39DAP | 1.39385 | |
42DAP/41DAP | 0.90245 | 0.61 |
43DAP/42DAP | 1.9122 | 0.627 |
47DAP/43DAP | 0.9526 | 0.87 |
52DAP/47DAP | 1.57987 | 0.681 |
57DAP/52DAP | 0.59404 | 0.322 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.5574 | |
41DAP/reference | 3.55731 | 0.012 |
42DAP/reference | 2.32715 | |
43DAP/reference | 0.39118 | |
47DAP/reference | 1.72046 | |
52DAP/reference | 1.02955 | |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87273 | 0.238 |
17DAP/reference | 0.90022 | 0.399 |
27DAP/reference | 1.03419 | 1 |
39DAP/reference | 1.36437 | 1 |
41DAP/reference | 1.37103 | 0.427 |
42DAP/reference | 0.98243 | 0.655 |
43DAP/reference | 1.64192 | 0.202 |
47DAP/reference | 1.10729 | 0.751 |
52DAP/reference | 1.42799 | 0.124 |
57DAP/reference | 1.31766 | 0.127 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.53011 | 0.096 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.0898 | |
47DAP/reference | 1.00227 | 0.754 |
52DAP/reference | 0.87702 | |
57DAP/reference | 0.92263 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.75228 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.29566 | |
51DAP/34DAP | 1.53171 | 0.654 |
52DAP/51DAP | 0.81789 | |
53DAP/52DAP | 1.07865 | 0.998 |
55DAP/53DAP | 0.73993 | 0.462 |
57DAP/55DAP | 7.89796 | 0.947 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.95742 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.67465 | 0.247 |
IL2-6/WTpooled | 1.46374 | |
IL7-5/WTpooled | 0.6284 | 0.483 |
IL7-3/WTpooled | 1.08932 | 1 |
IL12-4/WTpooled | 0.82667 | 0.581 |
IL1-4/WTpooled | 1.70622 | 0.426 |
WT/WTpooled | 0.86846 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.42406 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.98776 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.51748 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.01587 | 1 |
Manapal/WT (red) | N/A | N/A |
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