Expression of 1-1-7.2.9.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.145310.76
27DAP/17DAP1.544640.836
39DAP/27DAP1.082130.733
41DAP/39DAP0.628720.154
42DAP/41DAP0.810611
43DAP/42DAP1.111971
47DAP/43DAP1.126281
52DAP/47DAP0.85570.623
57DAP/52DAP2.208410.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.826650.132
17DAP/reference1.313080.028
27DAP/reference1.289940.405
39DAP/reference1.01941
41DAP/reference1.040580.91
42DAP/reference1.224260.05
43DAP/reference1.108580.678
47DAP/reference1.150560.524
52DAP/reference1.286520.524
57DAP/reference0.954910.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978120.801
27DAP/17DAP1.788470.079
39DAP/27DAP0.567880.045
41DAP/39DAP1.39385
42DAP/41DAP0.902450.61
43DAP/42DAP1.91220.627
47DAP/43DAP0.95260.87
52DAP/47DAP1.579870.681
57DAP/52DAP0.594040.322
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference1.5574
41DAP/reference3.557310.012
42DAP/reference2.32715
43DAP/reference0.39118
47DAP/reference1.72046
52DAP/reference1.02955
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872730.238
17DAP/reference0.900220.399
27DAP/reference1.034191
39DAP/reference1.364371
41DAP/reference1.371030.427
42DAP/reference0.982430.655
43DAP/reference1.641920.202
47DAP/reference1.107290.751
52DAP/reference1.427990.124
57DAP/reference1.317660.127

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference0.530110.096
42DAP/referenceN/AN/A
43DAP/reference1.0898
47DAP/reference1.002270.754
52DAP/reference0.87702
57DAP/reference0.922630.516

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.752281
26DAP/20DAPN/AN/A
34DAP/26DAP1.29566
51DAP/34DAP1.531710.654
52DAP/51DAP0.81789
53DAP/52DAP1.078650.998
55DAP/53DAP0.739930.462
57DAP/55DAP7.897960.947
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.957420.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.674650.247
IL2-6/WTpooled1.46374
IL7-5/WTpooled0.62840.483
IL7-3/WTpooled1.089321
IL12-4/WTpooled0.826670.581
IL1-4/WTpooled1.706220.426
WT/WTpooled0.868461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.42406

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.987761
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.517480.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.015871
Manapal/WT (red)N/AN/A