Expression of 1-1-7.2.9.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11677 | 0.838 |
27DAP/17DAP | 0.93736 | 0.898 |
39DAP/27DAP | 1.06693 | 1 |
41DAP/39DAP | 1.20979 | 0.795 |
42DAP/41DAP | 1.1383 | 1 |
43DAP/42DAP | 0.88219 | 0.773 |
47DAP/43DAP | 1.11187 | 0.876 |
52DAP/47DAP | 1.15542 | 0.976 |
57DAP/52DAP | 1.62439 | 0.561 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17584 | 0.252 |
17DAP/reference | 1.13189 | 0.21 |
27DAP/reference | 1.00954 | 0.847 |
39DAP/reference | 1.22565 | 0.059 |
41DAP/reference | 1.31764 | 0.029 |
42DAP/reference | 1.01874 | 0.731 |
43DAP/reference | 1.01417 | 1 |
47DAP/reference | 0.9972 | 0.568 |
52DAP/reference | 0.87035 | 0.121 |
57DAP/reference | 0.91979 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07995 | 0.923 |
27DAP/17DAP | 1.12085 | 0.751 |
39DAP/27DAP | 0.98299 | 0.768 |
41DAP/39DAP | 1.05498 | 0.914 |
42DAP/41DAP | 0.81687 | 0.399 |
43DAP/42DAP | 1.19936 | 0.446 |
47DAP/43DAP | 0.90071 | 0.466 |
52DAP/47DAP | 1.16977 | 0.742 |
57DAP/52DAP | 0.8501 | 0.587 |
57DAP/7DAP | 1.19852 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75242 | 0.08 |
17DAP/reference | 0.76483 | 0.011 |
27DAP/reference | 0.96125 | 0.264 |
39DAP/reference | 0.93127 | 0.264 |
41DAP/reference | 0.8733 | 0.184 |
42DAP/reference | 0.98281 | 0.554 |
43DAP/reference | 0.72863 | 0.012 |
47DAP/reference | 0.88486 | 0.222 |
52DAP/reference | 0.98027 | 0.523 |
57DAP/reference | 0.80188 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34458 | 0.053 |
17DAP/reference | 1.18735 | 0.151 |
27DAP/reference | 1.01309 | 0.79 |
39DAP/reference | 1.07778 | 0.824 |
41DAP/reference | 0.96189 | 0.412 |
42DAP/reference | 1.06799 | 0.634 |
43DAP/reference | 1.83385 | 0.038 |
47DAP/reference | 1.31768 | 0.054 |
52DAP/reference | 1.39558 | 0.008 |
57DAP/reference | 1.20331 | 0.409 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84439 | 0.147 |
17DAP/reference | 1.04947 | 0.988 |
27DAP/reference | 0.85516 | 0.089 |
39DAP/reference | 0.98817 | 0.643 |
41DAP/reference | 1.07986 | 0.674 |
42DAP/reference | 0.79873 | 0.049 |
43DAP/reference | 0.83457 | 0.12 |
47DAP/reference | 1.03363 | 0.754 |
52DAP/reference | 0.98901 | 0.573 |
57DAP/reference | 0.84282 | 0.059 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90643 | 0.787 |
26DAP/20DAP | 0.8936 | |
34DAP/26DAP | 1.29429 | 0.819 |
51DAP/34DAP | 0.83851 | |
52DAP/51DAP | 1.3187 | 0.281 |
53DAP/52DAP | 1.14676 | 0.58 |
55DAP/53DAP | 0.79637 | 0.632 |
57DAP/55DAP | 1.07633 | 0.826 |
62DAP/57DAP | 0.81989 | 0.681 |
68DAP/62DAP | 0.94987 | 0.834 |
68DAP/14DAP | 0.90201 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02835 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.75806 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.80173 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.18722 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.27438 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.61267 | 0.792 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.96709 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.68623 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97584 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.06461 | 1 |
DC3000/delta hrp 24h | 1.15305 | 0.356 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97265 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04725 | 1 |
Var 0h | 0.65616 | 1 |
Var 12h I row2-row1 | 1.20677 | |
Var 12h NI row2-row1 | 0.96078 | 0.713 |
Var 36h I row2-row1 | 2.68968 | |
Var 36h NI row2-row1 | 1.03248 | |
Var 60h I row2-row1 | 1.0414 | 1 |
Var 60h NI row2-row1 | 0.83986 | 0.483 |
Time course 0hI-0hNI | 0.98212 | 0.936 |
Time course 12hI-12hNI | 1.04631 | 0.672 |
Time course 36hI-36hNI | 0.89082 | 0.284 |
Time course 60hI-60hNI | 0.85449 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01835 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.15284 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.00641 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08722 | 0.051 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04033 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02767 | 1 |
Manapal/WT (break) | 0.816 | 1 |
Manapal/WT (red) | 1.17519 | 0.413 |
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