Expression of 1-1-7.2.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.859470.427
27DAP/17DAP0.787840.33
39DAP/27DAP0.914710.544
41DAP/39DAP1.280020.504
42DAP/41DAP1.140850.767
43DAP/42DAP1.026041
47DAP/43DAP0.898090.652
52DAP/47DAP1.51110.334
57DAP/52DAP0.905850.681

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.357910.024
17DAP/reference1.026420.384
27DAP/reference1.017520.806
39DAP/reference0.934530.37
41DAP/reference0.985410.814
42DAP/reference1.039690.219
43DAP/reference1.038230.403
47DAP/reference0.922180.027
52DAP/reference0.874720.089
57DAP/reference0.896790.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.982730.732
27DAP/17DAP0.958620.854
39DAP/27DAP0.923710.502
41DAP/39DAP1.043270.827
42DAP/41DAP0.983220.812
43DAP/42DAP0.939670.383
47DAP/43DAP0.988320.954
52DAP/47DAP1.083720.734
57DAP/52DAP1.037040.745
57DAP/7DAP1.106581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01590.945
17DAP/reference0.976760.389
27DAP/reference0.874640.01
39DAP/reference0.983790.411
41DAP/reference0.960290.259
42DAP/reference0.937810.037
43DAP/reference0.902140.159
47DAP/reference0.803080.168
52DAP/reference0.84320.083
57DAP/reference0.870740.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.10610.284
17DAP/reference1.249560.01
27DAP/reference0.986230.554
39DAP/reference0.885390.102
41DAP/reference0.953040.226
42DAP/reference0.897970.037
43DAP/reference1.073060.735
47DAP/reference0.86970.015
52DAP/reference0.884410.043
57DAP/reference1.003540.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.11580.067
17DAP/reference1.125520.212
27DAP/reference0.936960.085
39DAP/reference0.925420.015
41DAP/reference0.900180.023
42DAP/reference0.887550.134
43DAP/reference0.966570.398
47DAP/reference1.158830.023
52DAP/reference0.920680.256
57DAP/reference1.159210.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025231
26DAP/20DAP0.976061
34DAP/26DAP1.004691
51DAP/34DAP0.963030.77
52DAP/51DAP0.996041
53DAP/52DAP0.819410.212
55DAP/53DAP0.949270.404
57DAP/55DAP0.906610.644
62DAP/57DAP1.034980.8
68DAP/62DAP0.984590.834
68DAP/14DAP0.980821

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.054060.627

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.127840.417
Mature Green Tomato/Ripe Tomato1.795480.048
Immature Eggplant/Mature Eggplant0.617240.062
Ripe Pepper/Ripe Tomato1.783211
Mature Eggplant/Ripe Tomato1.099271

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.143110.742
1-1-2/M820.885050.958
12-2/M820.890810.955
12-4/M820.969721
1-3/M821.058311
2-1-1/M821.26215
2-1/M820.40007
2-6/M820.944561
3-2/M820.997721
4-1-1/M821.086571
4-1/M820.896710.665
4-3-2/M821.14951
4-3/M821.29740.268
5-3/M821.012721
6-2/M821.28944
6-3/M820.919391
7-1/M821.056430.598
7-2/M821.012821
9-3-2/M821.121851

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.200590.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.822370.294
IL12-4/WTpooled0.978321
IL1-4/WTpooled0.888110.834
WT/WTpooled1.036161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.925730.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94380.941
DC3000/delta hrp 6h1.050770.857
DC3000/delta hrp 12h0.988161
DC3000/delta hrp 24h0.965890.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.715560.028
DC3000 delta B/DC3000 delta AB0.831230.097

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.990451
Exp 36h0.887790.661
Exp 60h0.865270.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024111
Var 0h0.232760.214
Var 12h I row2-row10.864430.39
Var 12h NI row2-row10.94220.713
Var 36h I row2-row11.054741
Var 36h NI row2-row11.079411
Var 60h I row2-row11.199060.543
Var 60h NI row2-row10.907770.932
Time course 0hI-0hNI1.007151
Time course 12hI-12hNI1.017410.861
Time course 36hI-36hNI0.992230.644
Time course 60hI-60hNI0.54980.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.110480.278
transgenic ySAMdc/azygous control (breaker)1.319230.248
transgenic ySAMdc/azygous control (red)2.042990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.958790.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.639680.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.03040.087
Manapal/WT (break)3.271480.381
Manapal/WT (red)5.493060.133