Expression of 1-1-7.3.1.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.610690.033
27DAP/17DAP0.968590.982
39DAP/27DAP1.985410.135
41DAP/39DAP0.889860.53
42DAP/41DAP0.990021
43DAP/42DAP1.133621
47DAP/43DAP1.18860.306
52DAP/47DAP1.393160.37
57DAP/52DAP0.712930.513

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.087280.662
17DAP/reference0.917170.194
27DAP/reference0.839130.055
39DAP/reference0.938560.404
41DAP/reference0.903420.267
42DAP/reference1.051170.431
43DAP/reference1.177550.026
47DAP/reference1.217960.026
52DAP/reference0.893390.093
57DAP/reference0.918830.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.923380.509
27DAP/17DAP1.309580.121
39DAP/27DAP0.908620.462
41DAP/39DAP0.860520.662
42DAP/41DAP1.479290.005
43DAP/42DAP1.157420.176
47DAP/43DAP0.966710.843
52DAP/47DAP0.912380.575
57DAP/52DAP0.817690.116
57DAP/7DAP1.304740.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.090760.427
17DAP/reference1.134160.102
27DAP/reference1.171030.01
39DAP/reference1.139010.252
41DAP/reference1.083450.723
42DAP/reference1.171570.132
43DAP/reference1.23760.056
47DAP/reference1.398820.044
52DAP/reference1.105240.599
57DAP/reference0.896990.043

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147310.1
17DAP/reference0.986030.548
27DAP/reference1.19060.174
39DAP/reference0.964560.526
41DAP/reference0.909860.124
42DAP/reference1.044380.987
43DAP/reference0.930860.32
47DAP/reference0.910160.221
52DAP/reference0.935390.327
57DAP/reference0.980970.72

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.205320.069
17DAP/reference1.059280.595
27DAP/reference1.353050.029
39DAP/reference1.3110.026
41DAP/reference1.249530.023
42DAP/reference1.555680.008
43DAP/reference1.719920.013
47DAP/reference1.28370.016
52DAP/reference1.380960.051
57DAP/reference1.667870.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.933411
26DAP/20DAP2.162930.098
34DAP/26DAP0.857160.419
51DAP/34DAP1.285680.056
52DAP/51DAP1.079040.638
53DAP/52DAP0.642980.066
55DAP/53DAP0.547220.022
57DAP/55DAP1.14210.881
62DAP/57DAP1.00351
68DAP/62DAP0.897120.769
68DAP/14DAP1.213020.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.610620.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.865280.058
Mature Green Tomato/Ripe Tomato0.380920.017
Immature Eggplant/Mature Eggplant2.209740.05
Ripe Pepper/Ripe Tomato0.802510.224
Mature Eggplant/Ripe Tomato0.399190.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.251930.526
1-1-2/M821.308331
12-2/M820.914070.955
12-4/M821.147741
1-3/M821.234110.479
2-1-1/M821.085840.764
2-1/M820.910860.345
2-6/M821.386860.452
3-2/M821.265520.549
4-1-1/M821.318611
4-1/M821.238210.853
4-3-2/M821.789460.508
4-3/M822.305450.268
5-3/M820.935151
6-2/M821.22671
6-3/M821.186081
7-1/M820.925181
7-2/M821.136451
9-3-2/M821.908210.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.007941
IL2-6/WTpooled1.493310.659
IL7-5/WTpooled1.00084
IL7-3/WTpooled0.916521
IL12-4/WTpooled1.135570.891
IL1-4/WTpooled1.020571
WT/WTpooled0.985741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.86110.256

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.898311
DC3000/delta hrp 6h1.206771
DC3000/delta hrp 12h0.940941
DC3000/delta hrp 24h1.482040.069

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.998811
DC3000 delta B/DC3000 delta AB0.80460.117

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.158740.254
Exp 36h0.951210.879
Exp 60h0.92570.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.033951
Var 0h1.035721
Var 12h I row2-row10.80090.338
Var 12h NI row2-row11.073360.649
Var 36h I row2-row11.077040.742
Var 36h NI row2-row11.114410.276
Var 60h I row2-row10.843710.374
Var 60h NI row2-row10.944791
Time course 0hI-0hNI0.990950.988
Time course 12hI-12hNI0.958180.742
Time course 36hI-36hNI0.888760.25
Time course 60hI-60hNI0.342130.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.213110.286
transgenic ySAMdc/azygous control (breaker)0.738850.137
transgenic ySAMdc/azygous control (red)1.262060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.083110.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.978650.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.886320.083
Manapal/WT (break)1.83690.183
Manapal/WT (red)2.579460.134