Expression of 1-1-7.3.1.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.61069 | 0.033 |
27DAP/17DAP | 0.96859 | 0.982 |
39DAP/27DAP | 1.98541 | 0.135 |
41DAP/39DAP | 0.88986 | 0.53 |
42DAP/41DAP | 0.99002 | 1 |
43DAP/42DAP | 1.13362 | 1 |
47DAP/43DAP | 1.1886 | 0.306 |
52DAP/47DAP | 1.39316 | 0.37 |
57DAP/52DAP | 0.71293 | 0.513 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08728 | 0.662 |
17DAP/reference | 0.91717 | 0.194 |
27DAP/reference | 0.83913 | 0.055 |
39DAP/reference | 0.93856 | 0.404 |
41DAP/reference | 0.90342 | 0.267 |
42DAP/reference | 1.05117 | 0.431 |
43DAP/reference | 1.17755 | 0.026 |
47DAP/reference | 1.21796 | 0.026 |
52DAP/reference | 0.89339 | 0.093 |
57DAP/reference | 0.91883 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92338 | 0.509 |
27DAP/17DAP | 1.30958 | 0.121 |
39DAP/27DAP | 0.90862 | 0.462 |
41DAP/39DAP | 0.86052 | 0.662 |
42DAP/41DAP | 1.47929 | 0.005 |
43DAP/42DAP | 1.15742 | 0.176 |
47DAP/43DAP | 0.96671 | 0.843 |
52DAP/47DAP | 0.91238 | 0.575 |
57DAP/52DAP | 0.81769 | 0.116 |
57DAP/7DAP | 1.30474 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09076 | 0.427 |
17DAP/reference | 1.13416 | 0.102 |
27DAP/reference | 1.17103 | 0.01 |
39DAP/reference | 1.13901 | 0.252 |
41DAP/reference | 1.08345 | 0.723 |
42DAP/reference | 1.17157 | 0.132 |
43DAP/reference | 1.2376 | 0.056 |
47DAP/reference | 1.39882 | 0.044 |
52DAP/reference | 1.10524 | 0.599 |
57DAP/reference | 0.89699 | 0.043 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14731 | 0.1 |
17DAP/reference | 0.98603 | 0.548 |
27DAP/reference | 1.1906 | 0.174 |
39DAP/reference | 0.96456 | 0.526 |
41DAP/reference | 0.90986 | 0.124 |
42DAP/reference | 1.04438 | 0.987 |
43DAP/reference | 0.93086 | 0.32 |
47DAP/reference | 0.91016 | 0.221 |
52DAP/reference | 0.93539 | 0.327 |
57DAP/reference | 0.98097 | 0.72 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20532 | 0.069 |
17DAP/reference | 1.05928 | 0.595 |
27DAP/reference | 1.35305 | 0.029 |
39DAP/reference | 1.311 | 0.026 |
41DAP/reference | 1.24953 | 0.023 |
42DAP/reference | 1.55568 | 0.008 |
43DAP/reference | 1.71992 | 0.013 |
47DAP/reference | 1.2837 | 0.016 |
52DAP/reference | 1.38096 | 0.051 |
57DAP/reference | 1.66787 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93341 | 1 |
26DAP/20DAP | 2.16293 | 0.098 |
34DAP/26DAP | 0.85716 | 0.419 |
51DAP/34DAP | 1.28568 | 0.056 |
52DAP/51DAP | 1.07904 | 0.638 |
53DAP/52DAP | 0.64298 | 0.066 |
55DAP/53DAP | 0.54722 | 0.022 |
57DAP/55DAP | 1.1421 | 0.881 |
62DAP/57DAP | 1.0035 | 1 |
68DAP/62DAP | 0.89712 | 0.769 |
68DAP/14DAP | 1.21302 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.61062 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.86528 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.38092 | 0.017 |
Immature Eggplant/Mature Eggplant | 2.20974 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.80251 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.39919 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.25193 | 0.526 |
1-1-2/M82 | 1.30833 | 1 |
12-2/M82 | 0.91407 | 0.955 |
12-4/M82 | 1.14774 | 1 |
1-3/M82 | 1.23411 | 0.479 |
2-1-1/M82 | 1.08584 | 0.764 |
2-1/M82 | 0.91086 | 0.345 |
2-6/M82 | 1.38686 | 0.452 |
3-2/M82 | 1.26552 | 0.549 |
4-1-1/M82 | 1.31861 | 1 |
4-1/M82 | 1.23821 | 0.853 |
4-3-2/M82 | 1.78946 | 0.508 |
4-3/M82 | 2.30545 | 0.268 |
5-3/M82 | 0.93515 | 1 |
6-2/M82 | 1.2267 | 1 |
6-3/M82 | 1.18608 | 1 |
7-1/M82 | 0.92518 | 1 |
7-2/M82 | 1.13645 | 1 |
9-3-2/M82 | 1.90821 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00794 | 1 |
IL2-6/WTpooled | 1.49331 | 0.659 |
IL7-5/WTpooled | 1.00084 | |
IL7-3/WTpooled | 0.91652 | 1 |
IL12-4/WTpooled | 1.13557 | 0.891 |
IL1-4/WTpooled | 1.02057 | 1 |
WT/WTpooled | 0.98574 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8611 | 0.256 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89831 | 1 |
DC3000/delta hrp 6h | 1.20677 | 1 |
DC3000/delta hrp 12h | 0.94094 | 1 |
DC3000/delta hrp 24h | 1.48204 | 0.069 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99881 | 1 |
DC3000 delta B/DC3000 delta AB | 0.8046 | 0.117 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15874 | 0.254 |
Exp 36h | 0.95121 | 0.879 |
Exp 60h | 0.9257 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03395 | 1 |
Var 0h | 1.03572 | 1 |
Var 12h I row2-row1 | 0.8009 | 0.338 |
Var 12h NI row2-row1 | 1.07336 | 0.649 |
Var 36h I row2-row1 | 1.07704 | 0.742 |
Var 36h NI row2-row1 | 1.11441 | 0.276 |
Var 60h I row2-row1 | 0.84371 | 0.374 |
Var 60h NI row2-row1 | 0.94479 | 1 |
Time course 0hI-0hNI | 0.99095 | 0.988 |
Time course 12hI-12hNI | 0.95818 | 0.742 |
Time course 36hI-36hNI | 0.88876 | 0.25 |
Time course 60hI-60hNI | 0.34213 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21311 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.73885 | 0.137 |
transgenic ySAMdc/azygous control (red) | 1.26206 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08311 | 0.125 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97865 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.88632 | 0.083 |
Manapal/WT (break) | 1.8369 | 0.183 |
Manapal/WT (red) | 2.57946 | 0.134 |
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