Expression of 1-1-7.3.1.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2869 | 0.912 |
27DAP/17DAP | 0.94259 | 0.801 |
39DAP/27DAP | 1.24312 | 0.593 |
41DAP/39DAP | 1.24224 | 0.511 |
42DAP/41DAP | 0.8794 | 1 |
43DAP/42DAP | 1.06374 | 1 |
47DAP/43DAP | 1.3202 | 0.715 |
52DAP/47DAP | 0.90359 | 0.695 |
57DAP/52DAP | 1.09149 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04565 | 0.928 |
17DAP/reference | 0.70469 | 0.007 |
27DAP/reference | 0.86688 | 0.095 |
39DAP/reference | 0.76141 | 0.017 |
41DAP/reference | 0.66344 | 0.008 |
42DAP/reference | 0.97458 | 0.315 |
43DAP/reference | 0.89811 | 0.056 |
47DAP/reference | 1.0581 | 1 |
52DAP/reference | 1.15652 | 0.128 |
57DAP/reference | 1.2696 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.41965 | 0.536 |
27DAP/17DAP | 1.09182 | 0.788 |
39DAP/27DAP | 1.01842 | 0.943 |
41DAP/39DAP | 0.97192 | 0.968 |
42DAP/41DAP | 1.13754 | 0.904 |
43DAP/42DAP | 1.20385 | 0.627 |
47DAP/43DAP | 1.39467 | 0.02 |
52DAP/47DAP | 1.1578 | 0.689 |
57DAP/52DAP | 1.45312 | 0.305 |
57DAP/7DAP | 1.5638 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9191 | 0.326 |
17DAP/reference | 1.10633 | 0.399 |
27DAP/reference | 1.32582 | 0.026 |
39DAP/reference | 1.23903 | 0.033 |
41DAP/reference | 1.19473 | 0.43 |
42DAP/reference | 1.26269 | 0.233 |
43DAP/reference | 1.532 | 0.074 |
47DAP/reference | 1.34379 | 0.039 |
52DAP/reference | 1.06657 | 0.832 |
57DAP/reference | 1.00955 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18443 | 0.626 |
17DAP/reference | 0.99513 | 0.659 |
27DAP/reference | 1.20178 | 0.488 |
39DAP/reference | 1.33191 | 0.112 |
41DAP/reference | 1.44363 | 0.01 |
42DAP/reference | 1.23518 | 0.162 |
43DAP/reference | 0.85964 | 0.166 |
47DAP/reference | 0.95205 | 0.208 |
52DAP/reference | 1.12743 | 0.168 |
57DAP/reference | 0.79686 | 0.05 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10295 | 0.422 |
17DAP/reference | 0.90413 | 0.243 |
27DAP/reference | 1.14169 | 0.125 |
39DAP/reference | 0.99665 | 0.693 |
41DAP/reference | 1.08263 | 0.537 |
42DAP/reference | 1.43217 | 0.014 |
43DAP/reference | 1.21858 | 0.418 |
47DAP/reference | 0.85353 | 0.036 |
52DAP/reference | 1.68772 | 0.649 |
57DAP/reference | 1.82925 | 0.04 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16589 | 0.966 |
26DAP/20DAP | 0.87506 | 1 |
34DAP/26DAP | 1.42637 | 1 |
51DAP/34DAP | 0.75088 | 0.504 |
52DAP/51DAP | 1.27683 | 0.522 |
53DAP/52DAP | 0.87372 | 0.612 |
55DAP/53DAP | 0.78297 | 0.43 |
57DAP/55DAP | 1.04668 | 0.823 |
62DAP/57DAP | 0.7258 | 0.05 |
68DAP/62DAP | 1.86311 | 0.616 |
68DAP/14DAP | 2.57291 | 0.019 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09744 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.396 | 0.113 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.33205 | 0.047 |
Ripe Pepper/Ripe Tomato | 1.54287 | 1 |
Mature Eggplant/Ripe Tomato | 1.45202 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.05024 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.8036 | 0.33 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.55767 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.87385 | 0.71 |
IL1-4/WTpooled | 1.36106 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04918 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88926 | 1 |
DC3000/delta hrp 6h | 1.0614 | 0.95 |
DC3000/delta hrp 12h | 0.94398 | 1 |
DC3000/delta hrp 24h | 0.90249 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.8606 | 0.253 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01032 | 1 |
Exp 36h | 0.88099 | 0.589 |
Exp 60h | 0.78127 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10947 | 1 |
Var 0h | 0.94114 | 1 |
Var 12h I row2-row1 | 0.78533 | 0.357 |
Var 12h NI row2-row1 | 1.14752 | 1 |
Var 36h I row2-row1 | 1.08069 | 1 |
Var 36h NI row2-row1 | 0.7257 | 0.276 |
Var 60h I row2-row1 | 1.11824 | |
Var 60h NI row2-row1 | 0.74519 | 1 |
Time course 0hI-0hNI | 0.9898 | 1 |
Time course 12hI-12hNI | 0.98342 | 0.935 |
Time course 36hI-36hNI | 1.12486 | 0.166 |
Time course 60hI-60hNI | 0.43651 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05691 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 0.94573 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.89684 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95282 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.47341 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09712 | 1 |
Manapal/WT (break) | 0.95519 | 1 |
Manapal/WT (red) | 1.61488 | 0.222 |
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