Expression of 1-1-7.3.1.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.28690.912
27DAP/17DAP0.942590.801
39DAP/27DAP1.243120.593
41DAP/39DAP1.242240.511
42DAP/41DAP0.87941
43DAP/42DAP1.063741
47DAP/43DAP1.32020.715
52DAP/47DAP0.903590.695
57DAP/52DAP1.091490.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.045650.928
17DAP/reference0.704690.007
27DAP/reference0.866880.095
39DAP/reference0.761410.017
41DAP/reference0.663440.008
42DAP/reference0.974580.315
43DAP/reference0.898110.056
47DAP/reference1.05811
52DAP/reference1.156520.128
57DAP/reference1.26960.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.419650.536
27DAP/17DAP1.091820.788
39DAP/27DAP1.018420.943
41DAP/39DAP0.971920.968
42DAP/41DAP1.137540.904
43DAP/42DAP1.203850.627
47DAP/43DAP1.394670.02
52DAP/47DAP1.15780.689
57DAP/52DAP1.453120.305
57DAP/7DAP1.5638

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91910.326
17DAP/reference1.106330.399
27DAP/reference1.325820.026
39DAP/reference1.239030.033
41DAP/reference1.194730.43
42DAP/reference1.262690.233
43DAP/reference1.5320.074
47DAP/reference1.343790.039
52DAP/reference1.066570.832
57DAP/reference1.009550.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.184430.626
17DAP/reference0.995130.659
27DAP/reference1.201780.488
39DAP/reference1.331910.112
41DAP/reference1.443630.01
42DAP/reference1.235180.162
43DAP/reference0.859640.166
47DAP/reference0.952050.208
52DAP/reference1.127430.168
57DAP/reference0.796860.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102950.422
17DAP/reference0.904130.243
27DAP/reference1.141690.125
39DAP/reference0.996650.693
41DAP/reference1.082630.537
42DAP/reference1.432170.014
43DAP/reference1.218580.418
47DAP/reference0.853530.036
52DAP/reference1.687720.649
57DAP/reference1.829250.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.165890.966
26DAP/20DAP0.875061
34DAP/26DAP1.426371
51DAP/34DAP0.750880.504
52DAP/51DAP1.276830.522
53DAP/52DAP0.873720.612
55DAP/53DAP0.782970.43
57DAP/55DAP1.046680.823
62DAP/57DAP0.72580.05
68DAP/62DAP1.863110.616
68DAP/14DAP2.572910.019

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.097440.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.3960.113
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.332050.047
Ripe Pepper/Ripe Tomato1.542871
Mature Eggplant/Ripe Tomato1.452021

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.05024
12-2/M82N/AN/A
12-4/M820.80360.33
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.55767
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.873850.71
IL1-4/WTpooled1.361061
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049181

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.889261
DC3000/delta hrp 6h1.06140.95
DC3000/delta hrp 12h0.943981
DC3000/delta hrp 24h0.902490.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.86060.253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.010321
Exp 36h0.880990.589
Exp 60h0.781270.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.109471
Var 0h0.941141
Var 12h I row2-row10.785330.357
Var 12h NI row2-row11.147521
Var 36h I row2-row11.080691
Var 36h NI row2-row10.72570.276
Var 60h I row2-row11.11824
Var 60h NI row2-row10.745191
Time course 0hI-0hNI0.98981
Time course 12hI-12hNI0.983420.935
Time course 36hI-36hNI1.124860.166
Time course 60hI-60hNI0.436510.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.056910.571
transgenic ySAMdc/azygous control (breaker)0.945730.49
transgenic ySAMdc/azygous control (red)0.896841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.952820.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.473410.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.097121
Manapal/WT (break)0.955191
Manapal/WT (red)1.614880.222