Expression of 1-1-7.3.10.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05185 | 0.893 |
27DAP/17DAP | 1.05857 | 1 |
39DAP/27DAP | 1.61497 | 0.028 |
41DAP/39DAP | 0.85576 | 0.475 |
42DAP/41DAP | 1.57718 | 0.162 |
43DAP/42DAP | 1.02815 | 0.937 |
47DAP/43DAP | 0.95859 | 0.794 |
52DAP/47DAP | 0.77208 | 0.502 |
57DAP/52DAP | 0.90127 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10975 | 0.928 |
17DAP/reference | 1.5019 | 0.012 |
27DAP/reference | 1.25525 | 0.109 |
39DAP/reference | 1.23385 | 0.061 |
41DAP/reference | 1.44995 | 0.029 |
42DAP/reference | 1.1915 | 0.076 |
43DAP/reference | 1.063 | 0.518 |
47DAP/reference | 1.16931 | 0.448 |
52DAP/reference | 1.02533 | 1 |
57DAP/reference | 1.01135 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09108 | 0.961 |
27DAP/17DAP | 0.87881 | 0.614 |
39DAP/27DAP | 0.8053 | 0.079 |
41DAP/39DAP | 1.37716 | 0.238 |
42DAP/41DAP | 0.82893 | 0.167 |
43DAP/42DAP | 0.96768 | 0.751 |
47DAP/43DAP | 1.2092 | 0.133 |
52DAP/47DAP | 0.70777 | 0.064 |
57DAP/52DAP | 0.87644 | 0.387 |
57DAP/7DAP | 0.55381 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87335 | 0.168 |
17DAP/reference | 1.0716 | 0.574 |
27DAP/reference | 1.03097 | 0.551 |
39DAP/reference | 1.04126 | 0.779 |
41DAP/reference | 0.85623 | 0.111 |
42DAP/reference | 1.00885 | 1 |
43DAP/reference | 1.09066 | 0.537 |
47DAP/reference | 0.97803 | 0.671 |
52DAP/reference | 0.93961 | 0.254 |
57DAP/reference | 0.96467 | 0.341 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10602 | 0.597 |
17DAP/reference | 1.79492 | 0.007 |
27DAP/reference | 1.28579 | 0.463 |
39DAP/reference | 1.20501 | 0.401 |
41DAP/reference | 1.16065 | 0.439 |
42DAP/reference | 1.06469 | 0.634 |
43DAP/reference | 1.30827 | 0.13 |
47DAP/reference | 1.14232 | 0.377 |
52DAP/reference | 1.24148 | 0.444 |
57DAP/reference | 1.31547 | 0.193 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90675 | 0.112 |
17DAP/reference | 1.31084 | 0.224 |
27DAP/reference | 1.11104 | 0.575 |
39DAP/reference | 1.07955 | 0.546 |
41DAP/reference | 0.95857 | 0.459 |
42DAP/reference | 1.14276 | 0.51 |
43DAP/reference | 1.301 | 0.369 |
47DAP/reference | 1.21584 | 0.187 |
52DAP/reference | 1.03468 | 0.946 |
57DAP/reference | 1.01003 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.4329 | 0.966 |
26DAP/20DAP | 0.86095 | 0.512 |
34DAP/26DAP | 0.93697 | 0.834 |
51DAP/34DAP | 0.75896 | 0.498 |
52DAP/51DAP | 0.97451 | 1 |
53DAP/52DAP | 0.7534 | 0.078 |
55DAP/53DAP | 1.34424 | 0.115 |
57DAP/55DAP | 0.87125 | 0.521 |
62DAP/57DAP | 0.99171 | 0.994 |
68DAP/62DAP | 0.84255 | 0.7 |
68DAP/14DAP | 1.19243 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.8334 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.42046 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.94357 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.32521 | |
Mature Eggplant/Ripe Tomato | 0.64337 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.33162 | 0.574 |
1-1-2/M82 | 1.10752 | 0.972 |
12-2/M82 | 0.90141 | 0.955 |
12-4/M82 | 1.12233 | 1 |
1-3/M82 | 1.03354 | |
2-1-1/M82 | 0.72925 | |
2-1/M82 | 1.08417 | 1 |
2-6/M82 | 1.02938 | 0.695 |
3-2/M82 | 1.0815 | |
4-1-1/M82 | 1.05445 | 1 |
4-1/M82 | 1.37059 | |
4-3-2/M82 | 1.40062 | 1 |
4-3/M82 | 1.02624 | 1 |
5-3/M82 | 1.02292 | 1 |
6-2/M82 | 0.73782 | 1 |
6-3/M82 | 1.7669 | |
7-1/M82 | 0.98472 | |
7-2/M82 | 0.90327 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 2.42716 | 0.584 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.1467 | 1 |
IL12-4/WTpooled | 0.81739 | 1 |
IL1-4/WTpooled | 1.10659 | 0.426 |
WT/WTpooled | 1.09377 | 0.692 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.44775 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04064 | 0.692 |
DC3000/delta hrp 6h | 1.04357 | 0.95 |
DC3000/delta hrp 12h | 1.15719 | 1 |
DC3000/delta hrp 24h | 1.03574 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.54073 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.49771 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 2.24345 | 1 |
Exp 36h | 0.8521 | 0.749 |
Exp 60h | 0.74904 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97007 | 1 |
Var 0h | 0.89136 | 0.594 |
Var 12h I row2-row1 | 0.74098 | 0.353 |
Var 12h NI row2-row1 | 0.88663 | 0.494 |
Var 36h I row2-row1 | 0.91824 | 1 |
Var 36h NI row2-row1 | 1.16371 | 0.482 |
Var 60h I row2-row1 | 1.15665 | 0.562 |
Var 60h NI row2-row1 | 1.01722 | 1 |
Time course 0hI-0hNI | 0.98416 | 0.958 |
Time course 12hI-12hNI | 1.0049 | 0.9 |
Time course 36hI-36hNI | 1.02329 | 0.881 |
Time course 60hI-60hNI | 0.23539 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12458 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.61285 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.07661 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04209 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.56787 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.32759 | 0.083 |
Manapal/WT (break) | 2.03606 | 0.126 |
Manapal/WT (red) | 1.41741 | 0.413 |
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