Expression of 1-1-7.3.10.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.051850.893
27DAP/17DAP1.058571
39DAP/27DAP1.614970.028
41DAP/39DAP0.855760.475
42DAP/41DAP1.577180.162
43DAP/42DAP1.028150.937
47DAP/43DAP0.958590.794
52DAP/47DAP0.772080.502
57DAP/52DAP0.901270.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.109750.928
17DAP/reference1.50190.012
27DAP/reference1.255250.109
39DAP/reference1.233850.061
41DAP/reference1.449950.029
42DAP/reference1.19150.076
43DAP/reference1.0630.518
47DAP/reference1.169310.448
52DAP/reference1.025331
57DAP/reference1.011350.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.091080.961
27DAP/17DAP0.878810.614
39DAP/27DAP0.80530.079
41DAP/39DAP1.377160.238
42DAP/41DAP0.828930.167
43DAP/42DAP0.967680.751
47DAP/43DAP1.20920.133
52DAP/47DAP0.707770.064
57DAP/52DAP0.876440.387
57DAP/7DAP0.553811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873350.168
17DAP/reference1.07160.574
27DAP/reference1.030970.551
39DAP/reference1.041260.779
41DAP/reference0.856230.111
42DAP/reference1.008851
43DAP/reference1.090660.537
47DAP/reference0.978030.671
52DAP/reference0.939610.254
57DAP/reference0.964670.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.106020.597
17DAP/reference1.794920.007
27DAP/reference1.285790.463
39DAP/reference1.205010.401
41DAP/reference1.160650.439
42DAP/reference1.064690.634
43DAP/reference1.308270.13
47DAP/reference1.142320.377
52DAP/reference1.241480.444
57DAP/reference1.315470.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.906750.112
17DAP/reference1.310840.224
27DAP/reference1.111040.575
39DAP/reference1.079550.546
41DAP/reference0.958570.459
42DAP/reference1.142760.51
43DAP/reference1.3010.369
47DAP/reference1.215840.187
52DAP/reference1.034680.946
57DAP/reference1.010030.73

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.43290.966
26DAP/20DAP0.860950.512
34DAP/26DAP0.936970.834
51DAP/34DAP0.758960.498
52DAP/51DAP0.974511
53DAP/52DAP0.75340.078
55DAP/53DAP1.344240.115
57DAP/55DAP0.871250.521
62DAP/57DAP0.991710.994
68DAP/62DAP0.842550.7
68DAP/14DAP1.192430.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.83340.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.420460.058
Mature Green Tomato/Ripe Tomato0.943570.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.32521
Mature Eggplant/Ripe Tomato0.643370.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.331620.574
1-1-2/M821.107520.972
12-2/M820.901410.955
12-4/M821.122331
1-3/M821.03354
2-1-1/M820.72925
2-1/M821.084171
2-6/M821.029380.695
3-2/M821.0815
4-1-1/M821.054451
4-1/M821.37059
4-3-2/M821.400621
4-3/M821.026241
5-3/M821.022921
6-2/M820.737821
6-3/M821.7669
7-1/M820.98472
7-2/M820.903270.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled2.427160.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.14671
IL12-4/WTpooled0.817391
IL1-4/WTpooled1.106590.426
WT/WTpooled1.093770.692

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.447751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040640.692
DC3000/delta hrp 6h1.043570.95
DC3000/delta hrp 12h1.157191
DC3000/delta hrp 24h1.035740.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.540730.025
DC3000 delta B/DC3000 delta AB0.497710.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h2.243451
Exp 36h0.85210.749
Exp 60h0.749040.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970071
Var 0h0.891360.594
Var 12h I row2-row10.740980.353
Var 12h NI row2-row10.886630.494
Var 36h I row2-row10.918241
Var 36h NI row2-row11.163710.482
Var 60h I row2-row11.156650.562
Var 60h NI row2-row11.017221
Time course 0hI-0hNI0.984160.958
Time course 12hI-12hNI1.00490.9
Time course 36hI-36hNI1.023290.881
Time course 60hI-60hNI0.235390.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.124580.699
transgenic ySAMdc/azygous control (breaker)1.612850.178
transgenic ySAMdc/azygous control (red)1.076610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.042090.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.567870.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.327590.083
Manapal/WT (break)2.036060.126
Manapal/WT (red)1.417410.413