Expression of 1-1-7.3.10.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.084280.911
27DAP/17DAP4.971910.677
39DAP/27DAP0.685440.397
41DAP/39DAP1.475090.038
42DAP/41DAP1.493120.681
43DAP/42DAP1.42110.714
47DAP/43DAP1.464310.618
52DAP/47DAP1.974760.593
57DAP/52DAP1.076170.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015090.787
17DAP/reference1.252420.015
27DAP/reference1.147810.179
39DAP/reference1.089020.048
41DAP/reference1.169850.241
42DAP/reference0.856880.027
43DAP/reference1.007740.904
47DAP/reference0.85760.03
52DAP/reference0.860090.189
57DAP/reference0.723140.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.716730.442
27DAP/17DAP0.760780.446
39DAP/27DAP1.207570.526
41DAP/39DAP1.004531
42DAP/41DAP0.900410.447
43DAP/42DAP1.048060.664
47DAP/43DAP0.98390.939
52DAP/47DAP1.121430.826
57DAP/52DAP1.060720.726
57DAP/7DAP0.55777

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923210.296
17DAP/reference1.275350.102
27DAP/reference1.015060.804
39DAP/reference0.934210.23
41DAP/reference0.844130.127
42DAP/reference1.043860.889
43DAP/reference1.239150.026
47DAP/reference0.94140.504
52DAP/reference1.09440.781
57DAP/reference1.033710.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.176290.083
17DAP/reference1.086671
27DAP/reference0.81660.139
39DAP/reference0.720570.074
41DAP/reference0.870260.156
42DAP/reference0.898720.261
43DAP/reference1.126140.802
47DAP/reference1.019411
52DAP/reference0.91590.203
57DAP/reference1.166490.252

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016181
17DAP/reference1.249660.298
27DAP/reference1.244160.037
39DAP/reference1.131270.057
41DAP/reference1.098060.521
42DAP/reference0.897960.22
43DAP/reference0.848480.256
47DAP/reference1.072190.593
52DAP/reference1.295320.457
57DAP/reference0.674910.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.139470.966
26DAP/20DAP1.596250.477
34DAP/26DAP1.403490.088
51DAP/34DAPN/AN/A
52DAP/51DAP1.19232
53DAP/52DAP1.062721
55DAP/53DAP0.574680.478
57DAP/55DAP1.07770.87
62DAP/57DAP1.138260.935
68DAP/62DAP0.721660.263
68DAP/14DAP0.409330.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.057750.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.75935
Immature Eggplant/Mature Eggplant1.91695
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.33798

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.986250.944
1-1-2/M820.911851
12-2/M821.14851
12-4/M821.017991
1-3/M820.79967
2-1-1/M820.887340.92
2-1/M82N/AN/A
2-6/M821.153150.425
3-2/M820.67175
4-1-1/M820.980811
4-1/M820.89079
4-3-2/M82N/AN/A
4-3/M821.118021
5-3/M820.97521
6-2/M820.72632
6-3/M821.078851
7-1/M820.77523
7-2/M821.033641
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.03933
IL2-6/WTpooled1.05891
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.058921
IL12-4/WTpooled0.856520.71
IL1-4/WTpooled0.86741
WT/WTpooled1.018581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.896550.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.9441
DC3000/delta hrp 6h0.54688
DC3000/delta hrp 12h1.080611
DC3000/delta hrp 24h0.930860.534

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.948011
Exp 36h0.81380.749
Exp 60h1.145981

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029691
Var 0h0.603861
Var 12h I row2-row11.062590.654
Var 12h NI row2-row11.406561
Var 36h I row2-row11.065580.601
Var 36h NI row2-row10.855410.478
Var 60h I row2-row11.014570.562
Var 60h NI row2-row11.291930.904
Time course 0hI-0hNI0.976350.886
Time course 12hI-12hNI1.062090.743
Time course 36hI-36hNI0.935420.373
Time course 60hI-60hNI0.752230.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.115920.408
transgenic ySAMdc/azygous control (breaker)1.157931
transgenic ySAMdc/azygous control (red)1.122650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030110.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.432720.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.100931
Manapal/WT (break)1.080651
Manapal/WT (red)2.244740.222