Expression of 1-1-7.3.10.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08428 | 0.911 |
27DAP/17DAP | 4.97191 | 0.677 |
39DAP/27DAP | 0.68544 | 0.397 |
41DAP/39DAP | 1.47509 | 0.038 |
42DAP/41DAP | 1.49312 | 0.681 |
43DAP/42DAP | 1.4211 | 0.714 |
47DAP/43DAP | 1.46431 | 0.618 |
52DAP/47DAP | 1.97476 | 0.593 |
57DAP/52DAP | 1.07617 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01509 | 0.787 |
17DAP/reference | 1.25242 | 0.015 |
27DAP/reference | 1.14781 | 0.179 |
39DAP/reference | 1.08902 | 0.048 |
41DAP/reference | 1.16985 | 0.241 |
42DAP/reference | 0.85688 | 0.027 |
43DAP/reference | 1.00774 | 0.904 |
47DAP/reference | 0.8576 | 0.03 |
52DAP/reference | 0.86009 | 0.189 |
57DAP/reference | 0.72314 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71673 | 0.442 |
27DAP/17DAP | 0.76078 | 0.446 |
39DAP/27DAP | 1.20757 | 0.526 |
41DAP/39DAP | 1.00453 | 1 |
42DAP/41DAP | 0.90041 | 0.447 |
43DAP/42DAP | 1.04806 | 0.664 |
47DAP/43DAP | 0.9839 | 0.939 |
52DAP/47DAP | 1.12143 | 0.826 |
57DAP/52DAP | 1.06072 | 0.726 |
57DAP/7DAP | 0.55777 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92321 | 0.296 |
17DAP/reference | 1.27535 | 0.102 |
27DAP/reference | 1.01506 | 0.804 |
39DAP/reference | 0.93421 | 0.23 |
41DAP/reference | 0.84413 | 0.127 |
42DAP/reference | 1.04386 | 0.889 |
43DAP/reference | 1.23915 | 0.026 |
47DAP/reference | 0.9414 | 0.504 |
52DAP/reference | 1.0944 | 0.781 |
57DAP/reference | 1.03371 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17629 | 0.083 |
17DAP/reference | 1.08667 | 1 |
27DAP/reference | 0.8166 | 0.139 |
39DAP/reference | 0.72057 | 0.074 |
41DAP/reference | 0.87026 | 0.156 |
42DAP/reference | 0.89872 | 0.261 |
43DAP/reference | 1.12614 | 0.802 |
47DAP/reference | 1.01941 | 1 |
52DAP/reference | 0.9159 | 0.203 |
57DAP/reference | 1.16649 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01618 | 1 |
17DAP/reference | 1.24966 | 0.298 |
27DAP/reference | 1.24416 | 0.037 |
39DAP/reference | 1.13127 | 0.057 |
41DAP/reference | 1.09806 | 0.521 |
42DAP/reference | 0.89796 | 0.22 |
43DAP/reference | 0.84848 | 0.256 |
47DAP/reference | 1.07219 | 0.593 |
52DAP/reference | 1.29532 | 0.457 |
57DAP/reference | 0.67491 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13947 | 0.966 |
26DAP/20DAP | 1.59625 | 0.477 |
34DAP/26DAP | 1.40349 | 0.088 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.19232 | |
53DAP/52DAP | 1.06272 | 1 |
55DAP/53DAP | 0.57468 | 0.478 |
57DAP/55DAP | 1.0777 | 0.87 |
62DAP/57DAP | 1.13826 | 0.935 |
68DAP/62DAP | 0.72166 | 0.263 |
68DAP/14DAP | 0.40933 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05775 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.75935 | |
Immature Eggplant/Mature Eggplant | 1.91695 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.33798 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98625 | 0.944 |
1-1-2/M82 | 0.91185 | 1 |
12-2/M82 | 1.14851 | |
12-4/M82 | 1.01799 | 1 |
1-3/M82 | 0.79967 | |
2-1-1/M82 | 0.88734 | 0.92 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.15315 | 0.425 |
3-2/M82 | 0.67175 | |
4-1-1/M82 | 0.98081 | 1 |
4-1/M82 | 0.89079 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.11802 | 1 |
5-3/M82 | 0.9752 | 1 |
6-2/M82 | 0.72632 | |
6-3/M82 | 1.07885 | 1 |
7-1/M82 | 0.77523 | |
7-2/M82 | 1.03364 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03933 | |
IL2-6/WTpooled | 1.0589 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05892 | 1 |
IL12-4/WTpooled | 0.85652 | 0.71 |
IL1-4/WTpooled | 0.86741 | |
WT/WTpooled | 1.01858 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89655 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.944 | 1 |
DC3000/delta hrp 6h | 0.54688 | |
DC3000/delta hrp 12h | 1.08061 | 1 |
DC3000/delta hrp 24h | 0.93086 | 0.534 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94801 | 1 |
Exp 36h | 0.8138 | 0.749 |
Exp 60h | 1.14598 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02969 | 1 |
Var 0h | 0.60386 | 1 |
Var 12h I row2-row1 | 1.06259 | 0.654 |
Var 12h NI row2-row1 | 1.40656 | 1 |
Var 36h I row2-row1 | 1.06558 | 0.601 |
Var 36h NI row2-row1 | 0.85541 | 0.478 |
Var 60h I row2-row1 | 1.01457 | 0.562 |
Var 60h NI row2-row1 | 1.29193 | 0.904 |
Time course 0hI-0hNI | 0.97635 | 0.886 |
Time course 12hI-12hNI | 1.06209 | 0.743 |
Time course 36hI-36hNI | 0.93542 | 0.373 |
Time course 60hI-60hNI | 0.75223 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11592 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.15793 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12265 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03011 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.43272 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10093 | 1 |
Manapal/WT (break) | 1.08065 | 1 |
Manapal/WT (red) | 2.24474 | 0.222 |
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