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Expression of 1-1-7.3.10.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.002960.951
27DAP/17DAP1.22130.785
39DAP/27DAP0.934880.641
41DAP/39DAP1.290820.498
42DAP/41DAP1.01541
43DAP/42DAP0.932940.858
47DAP/43DAP1.057840.715
52DAP/47DAP1.084270.869
57DAP/52DAP1.056960.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.928530.062
17DAP/reference1.021670.565
27DAP/reference0.97730.61
39DAP/reference1.030780.465
41DAP/reference0.92170.341
42DAP/reference0.922830.046
43DAP/reference0.948540.519
47DAP/reference0.926880.083
52DAP/reference1.033640.8
57DAP/reference0.992010.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951610.311
27DAP/17DAP0.990660.943
39DAP/27DAP0.941030.462
41DAP/39DAP1.045240.748
42DAP/41DAP0.980250.776
43DAP/42DAP1.009030.699
47DAP/43DAP1.017550.956
52DAP/47DAP1.016790.945
57DAP/52DAP0.914390.313
57DAP/7DAP0.983031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099730.292
17DAP/reference1.034980.477
27DAP/reference1.03260.197
39DAP/reference1.018280.351
41DAP/reference0.987270.357
42DAP/reference1.014950.534
43DAP/reference1.035150.408
47DAP/reference0.939780.383
52DAP/reference0.959940.398
57DAP/reference0.969050.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.034740.416
17DAP/reference1.011521
27DAP/reference0.946270.381
39DAP/reference0.916990.126
41DAP/reference0.887840.07
42DAP/reference0.961230.392
43DAP/reference1.011510.939
47DAP/reference1.054120.603
52DAP/reference0.950490.239
57DAP/reference0.995450.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.974160.268
17DAP/reference0.974620.381
27DAP/reference1.017060.721
39DAP/reference0.999210.889
41DAP/reference0.967360.264
42DAP/reference0.896550.059
43DAP/reference0.993240.738
47DAP/reference0.990090.593
52DAP/reference1.006940.965
57DAP/reference0.816710.036

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.051390.966
26DAP/20DAP0.920610.317
34DAP/26DAP0.994471
51DAP/34DAP1.020020.883
52DAP/51DAP1.015410.904
53DAP/52DAP0.975520.854
55DAP/53DAP1.032440.994
57DAP/55DAP0.963980.828
62DAP/57DAP0.998320.994
68DAP/62DAP0.892570.7
68DAP/14DAP1.489950.403

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.037220.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.029881
Mature Green Tomato/Ripe Tomato1.174280.119
Immature Eggplant/Mature Eggplant1.171010.157
Ripe Pepper/Ripe Tomato0.526690.224
Mature Eggplant/Ripe Tomato0.681910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.029311
1-1-2/M820.93261
12-2/M820.941990.955
12-4/M820.944171
1-3/M820.956181
2-1-1/M821.097910.689
2-1/M820.93639N/A
2-6/M820.974251
3-2/M820.973211
4-1-1/M821.030391
4-1/M821.090890.334
4-3-2/M821.015331
4-3/M820.984991
5-3/M821.036230.572
6-2/M821.183891
6-3/M821.049151
7-1/M820.920381
7-2/M821.003121
9-3-2/M820.778460.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.43626N/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.82996N/A
IL1-4/WTpooled1.172641
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.038781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928790.084
DC3000/delta hrp 6h0.897660.95
DC3000/delta hrp 12h1.136261
DC3000/delta hrp 24h1.012760.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.931570.171
DC3000 delta B/DC3000 delta AB0.988991

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.873391
Exp 36h1.462970.489
Exp 60h1.389470.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009191
Var 0h0.503990.98
Var 12h I row2-row11.520210.506
Var 12h NI row2-row10.949490.546
Var 36h I row2-row10.964171
Var 36h NI row2-row11.001731
Var 60h I row2-row11.345231
Var 60h NI row2-row11.170670.904
Time course 0hI-0hNI1.045080.833
Time course 12hI-12hNI1.077630.55
Time course 36hI-36hNI1.032210.28
Time course 60hI-60hNI1.065740.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004760.541
transgenic ySAMdc/azygous control (breaker)0.977961
transgenic ySAMdc/azygous control (red)1.164830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007290.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.122450.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.76520.172
Manapal/WT (break)1.014661
Manapal/WT (red)1.37770.15