Expression of 1-1-7.3.11.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97295 | 0.752 |
27DAP/17DAP | 0.92876 | 0.863 |
39DAP/27DAP | 0.84943 | 0.399 |
41DAP/39DAP | 1.17629 | 0.58 |
42DAP/41DAP | 1.03673 | 1 |
43DAP/42DAP | 0.95323 | 0.754 |
47DAP/43DAP | 0.99651 | 0.92 |
52DAP/47DAP | 1.25702 | 0.553 |
57DAP/52DAP | 0.97203 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90722 | 0.103 |
17DAP/reference | 0.94531 | 0.448 |
27DAP/reference | 0.98694 | 0.567 |
39DAP/reference | 0.93637 | 0.36 |
41DAP/reference | 1.00325 | 1 |
42DAP/reference | 0.94272 | 0.099 |
43DAP/reference | 1.02465 | 0.596 |
47DAP/reference | 0.9851 | 0.445 |
52DAP/reference | 0.99019 | 0.636 |
57DAP/reference | 1.10339 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03151 | 0.774 |
27DAP/17DAP | 1.01978 | 0.954 |
39DAP/27DAP | 0.99291 | 1 |
41DAP/39DAP | 1.04739 | 0.727 |
42DAP/41DAP | 0.97282 | 0.753 |
43DAP/42DAP | 1.00555 | 0.788 |
47DAP/43DAP | 0.99391 | 0.985 |
52DAP/47DAP | 0.95498 | |
57DAP/52DAP | 0.95334 | 0.494 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96095 | 0.27 |
17DAP/reference | 0.9481 | 0.064 |
27DAP/reference | 0.99174 | 0.53 |
39DAP/reference | 0.96669 | 0.17 |
41DAP/reference | 0.90642 | 0.019 |
42DAP/reference | 0.94154 | 0.066 |
43DAP/reference | 0.95964 | 0.305 |
47DAP/reference | 0.92617 | 0.222 |
52DAP/reference | 0.96136 | 0.304 |
57DAP/reference | 0.89027 | 0.074 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99298 | 0.869 |
17DAP/reference | 1.0186 | 0.892 |
27DAP/reference | 0.99338 | 0.686 |
39DAP/reference | 0.99911 | 0.722 |
41DAP/reference | 0.97121 | 0.194 |
42DAP/reference | 0.84097 | 0.169 |
43DAP/reference | 0.96287 | 0.459 |
47DAP/reference | 0.94199 | 0.126 |
52DAP/reference | 0.98265 | 0.239 |
57DAP/reference | 0.95389 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97533 | 0.074 |
17DAP/reference | 0.96685 | 0.462 |
27DAP/reference | 0.92968 | 0.027 |
39DAP/reference | 0.95638 | 0.163 |
41DAP/reference | 0.91546 | 0.018 |
42DAP/reference | 0.99674 | 1 |
43DAP/reference | 0.96385 | 0.098 |
47DAP/reference | 0.96072 | 0.249 |
52DAP/reference | 0.95004 | 0.424 |
57DAP/reference | 0.97155 | 0.424 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01683 | 0.966 |
26DAP/20DAP | 0.94654 | 0.512 |
34DAP/26DAP | 1.01868 | 1 |
51DAP/34DAP | 0.99293 | 0.924 |
52DAP/51DAP | 1.01718 | 0.842 |
53DAP/52DAP | 0.75152 | |
55DAP/53DAP | 0.8746 | |
57DAP/55DAP | 0.96991 | 0.872 |
62DAP/57DAP | 1.0159 | 1 |
68DAP/62DAP | 1.14146 | 0.36 |
68DAP/14DAP | 1.39448 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02146 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03158 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.10849 | 0.632 |
Immature Eggplant/Mature Eggplant | 0.90114 | 0.448 |
Ripe Pepper/Ripe Tomato | 1.2064 | 1 |
Mature Eggplant/Ripe Tomato | 1.13094 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87674 | 0.536 |
1-1-2/M82 | 0.96826 | 1 |
12-2/M82 | 0.96304 | 0.955 |
12-4/M82 | 1.02632 | 1 |
1-3/M82 | 1.04645 | 1 |
2-1-1/M82 | 1.01507 | 1 |
2-1/M82 | 0.89112 | 0.74 |
2-6/M82 | 0.96989 | 1 |
3-2/M82 | 0.97616 | 1 |
4-1-1/M82 | 0.98585 | 1 |
4-1/M82 | 0.94049 | 1 |
4-3-2/M82 | 0.98901 | 1 |
4-3/M82 | 0.9451 | 0.72 |
5-3/M82 | 1.00233 | 1 |
6-2/M82 | 0.98908 | 1 |
6-3/M82 | 0.99312 | 1 |
7-1/M82 | 0.98775 | 0.803 |
7-2/M82 | 0.95278 | 0.881 |
9-3-2/M82 | 0.99613 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.41861 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 2.45343 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.94691 | 1 |
WT/WTpooled | 0.94817 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05081 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98813 | 1 |
DC3000/delta hrp 6h | 1.14571 | 1 |
DC3000/delta hrp 12h | 0.80349 | |
DC3000/delta hrp 24h | 1.04685 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.45103 | 0.313 |
DC3000 delta B/DC3000 delta AB | 1.01407 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15198 | 1 |
Exp 36h | 0.59699 | 0.456 |
Exp 60h | 1.05827 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99311 | 1 |
Var 0h | 1.02161 | 1 |
Var 12h I row2-row1 | 1.22162 | 0.222 |
Var 12h NI row2-row1 | 1.04278 | 1 |
Var 36h I row2-row1 | 0.94204 | 1 |
Var 36h NI row2-row1 | 0.88707 | 0.469 |
Var 60h I row2-row1 | 1.03177 | 0.562 |
Var 60h NI row2-row1 | 1.01715 | 1 |
Time course 0hI-0hNI | 1.0316 | 0.867 |
Time course 12hI-12hNI | 1.01568 | 0.836 |
Time course 36hI-36hNI | 0.95062 | 0.396 |
Time course 60hI-60hNI | 1.08943 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92042 | 0.301 |
transgenic ySAMdc/azygous control (breaker) | 0.9466 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.0968 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9991 | 0.94 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02342 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86804 | 1 |
Manapal/WT (break) | 0.88449 | 1 |
Manapal/WT (red) | 1.19702 | 0.413 |
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