Expression of 1-1-7.3.11.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972950.752
27DAP/17DAP0.928760.863
39DAP/27DAP0.849430.399
41DAP/39DAP1.176290.58
42DAP/41DAP1.036731
43DAP/42DAP0.953230.754
47DAP/43DAP0.996510.92
52DAP/47DAP1.257020.553
57DAP/52DAP0.972030.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.907220.103
17DAP/reference0.945310.448
27DAP/reference0.986940.567
39DAP/reference0.936370.36
41DAP/reference1.003251
42DAP/reference0.942720.099
43DAP/reference1.024650.596
47DAP/reference0.98510.445
52DAP/reference0.990190.636
57DAP/reference1.103390.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031510.774
27DAP/17DAP1.019780.954
39DAP/27DAP0.992911
41DAP/39DAP1.047390.727
42DAP/41DAP0.972820.753
43DAP/42DAP1.005550.788
47DAP/43DAP0.993910.985
52DAP/47DAP0.95498
57DAP/52DAP0.953340.494
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960950.27
17DAP/reference0.94810.064
27DAP/reference0.991740.53
39DAP/reference0.966690.17
41DAP/reference0.906420.019
42DAP/reference0.941540.066
43DAP/reference0.959640.305
47DAP/reference0.926170.222
52DAP/reference0.961360.304
57DAP/reference0.890270.074

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992980.869
17DAP/reference1.01860.892
27DAP/reference0.993380.686
39DAP/reference0.999110.722
41DAP/reference0.971210.194
42DAP/reference0.840970.169
43DAP/reference0.962870.459
47DAP/reference0.941990.126
52DAP/reference0.982650.239
57DAP/reference0.953890.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975330.074
17DAP/reference0.966850.462
27DAP/reference0.929680.027
39DAP/reference0.956380.163
41DAP/reference0.915460.018
42DAP/reference0.996741
43DAP/reference0.963850.098
47DAP/reference0.960720.249
52DAP/reference0.950040.424
57DAP/reference0.971550.424

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016830.966
26DAP/20DAP0.946540.512
34DAP/26DAP1.018681
51DAP/34DAP0.992930.924
52DAP/51DAP1.017180.842
53DAP/52DAP0.75152
55DAP/53DAP0.8746
57DAP/55DAP0.969910.872
62DAP/57DAP1.01591
68DAP/62DAP1.141460.36
68DAP/14DAP1.394480.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.021460.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.031580.666
Mature Green Tomato/Ripe Tomato1.108490.632
Immature Eggplant/Mature Eggplant0.901140.448
Ripe Pepper/Ripe Tomato1.20641
Mature Eggplant/Ripe Tomato1.130940.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.876740.536
1-1-2/M820.968261
12-2/M820.963040.955
12-4/M821.026321
1-3/M821.046451
2-1-1/M821.015071
2-1/M820.891120.74
2-6/M820.969891
3-2/M820.976161
4-1-1/M820.985851
4-1/M820.940491
4-3-2/M820.989011
4-3/M820.94510.72
5-3/M821.002331
6-2/M820.989081
6-3/M820.993121
7-1/M820.987750.803
7-2/M820.952780.881
9-3-2/M820.996131

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.41861
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled2.45343
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.946911
WT/WTpooled0.948171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050810.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988131
DC3000/delta hrp 6h1.145711
DC3000/delta hrp 12h0.80349
DC3000/delta hrp 24h1.046850.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.451030.313
DC3000 delta B/DC3000 delta AB1.014070.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.151981
Exp 36h0.596990.456
Exp 60h1.058270.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993111
Var 0h1.021611
Var 12h I row2-row11.221620.222
Var 12h NI row2-row11.042781
Var 36h I row2-row10.942041
Var 36h NI row2-row10.887070.469
Var 60h I row2-row11.031770.562
Var 60h NI row2-row11.017151
Time course 0hI-0hNI1.03160.867
Time course 12hI-12hNI1.015680.836
Time course 36hI-36hNI0.950620.396
Time course 60hI-60hNI1.089430.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.920420.301
transgenic ySAMdc/azygous control (breaker)0.94660.49
transgenic ySAMdc/azygous control (red)1.09680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99910.94

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.023421

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.868041
Manapal/WT (break)0.884491
Manapal/WT (red)1.197020.413