Expression of 1-1-7.3.11.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.08970.681
27DAP/17DAP1.112280.849
39DAP/27DAP1.035851
41DAP/39DAP1.181080.224
42DAP/41DAP0.91541
43DAP/42DAP0.979610.925
47DAP/43DAP0.970510.876
52DAP/47DAP0.964250.884
57DAP/52DAP1.118210.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.922440.691
41DAP/reference1.765720.022
42DAP/reference1.090160.931
43DAP/referenceN/AN/A
47DAP/reference1.147060.306
52DAP/reference1.93541
57DAP/reference0.596490.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.006111
27DAP/17DAP1.048950.842
39DAP/27DAP0.915530.477
41DAP/39DAP1.029990.801
42DAP/41DAP0.965910.721
43DAP/42DAP0.998891
47DAP/43DAP0.973140.774
52DAP/47DAP1.004161
57DAP/52DAP0.981210.75
57DAP/7DAP0.983081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.236950.054
17DAP/reference1.57020.006
27DAP/reference1.560850.01
39DAP/reference1.64350.006
41DAP/reference1.558090.015
42DAP/reference1.966450.006
43DAP/reference1.990520.006
47DAP/reference1.291240.504
52DAP/reference1.885360.007
57DAP/reference1.759790.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959930.564
17DAP/reference0.959160.26
27DAP/reference1.215761
39DAP/reference0.935250.214
41DAP/reference0.864370.156
42DAP/reference0.85946
43DAP/reference0.939170.45
47DAP/reference1.01646
52DAP/reference0.976180.38
57DAP/reference0.995730.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071510.56
17DAP/reference1.064050.675
27DAP/reference1.434570.017
39DAP/reference1.373290.018
41DAP/reference1.287880.038
42DAP/reference1.476880.01
43DAP/reference1.406530.055
47DAP/reference1.011120.966
52DAP/reference1.316330.161
57DAP/reference1.719870.385

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.005410.966
26DAP/20DAP0.99571
34DAP/26DAP1.017741
51DAP/34DAP1.024670.909
52DAP/51DAP0.972991
53DAP/52DAPN/AN/A
55DAP/53DAP0.916720.024
57DAP/55DAP0.885970.443
62DAP/57DAP0.991871
68DAP/62DAP0.932510.7
68DAP/14DAP1.380670.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.988730.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.074690.666
Mature Green Tomato/Ripe Tomato0.877050.446
Immature Eggplant/Mature Eggplant0.800480.292
Ripe Pepper/Ripe Tomato5.371551
Mature Eggplant/Ripe Tomato2.548110.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.029261
1-1-2/M820.990941
12-2/M820.916540.955
12-4/M820.971381
1-3/M821.031181
2-1-1/M820.925490.683
2-1/M820.97829
2-6/M820.962241
3-2/M820.978540.752
4-1-1/M821.070521
4-1/M820.917870.665
4-3-2/M820.928361
4-3/M820.944640.72
5-3/M821.035730.572
6-2/M821.175591
6-3/M821.029351
7-1/M821.009091
7-2/M820.900490.796
9-3-2/M820.869860.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.223190.277
IL2-6/WTpooled0.832160.358
IL7-5/WTpooled1.000411
IL7-3/WTpooled0.859430.31
IL12-4/WTpooled1.071391
IL1-4/WTpooled0.743990.415
WT/WTpooled1.050311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.882450.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993281
DC3000/delta hrp 6h0.954960.95
DC3000/delta hrp 12h0.939481
DC3000/delta hrp 24h1.041180.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.070470.476
DC3000 delta B/DC3000 delta AB1.02150.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.784911
Exp 36h0.83280.539
Exp 60h0.961170.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.037491
Var 0h0.395050.457
Var 12h I row2-row11.113640.242
Var 12h NI row2-row10.927290.488
Var 36h I row2-row10.783570.805
Var 36h NI row2-row10.970360.645
Var 60h I row2-row11.174461
Var 60h NI row2-row11.179970.904
Time course 0hI-0hNI1.005861
Time course 12hI-12hNI1.056570.714
Time course 36hI-36hNI0.964750.396
Time course 60hI-60hNI0.955110.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.033430.863
transgenic ySAMdc/azygous control (breaker)1.373931
transgenic ySAMdc/azygous control (red)1.445260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.989661

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.209180.14
Manapal/WT (break)1.452211
Manapal/WT (red)1.224290.222