Expression of 1-1-7.3.11.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0897 | 0.681 |
27DAP/17DAP | 1.11228 | 0.849 |
39DAP/27DAP | 1.03585 | 1 |
41DAP/39DAP | 1.18108 | 0.224 |
42DAP/41DAP | 0.9154 | 1 |
43DAP/42DAP | 0.97961 | 0.925 |
47DAP/43DAP | 0.97051 | 0.876 |
52DAP/47DAP | 0.96425 | 0.884 |
57DAP/52DAP | 1.11821 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.92244 | 0.691 |
41DAP/reference | 1.76572 | 0.022 |
42DAP/reference | 1.09016 | 0.931 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.14706 | 0.306 |
52DAP/reference | 1.93541 | |
57DAP/reference | 0.59649 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00611 | 1 |
27DAP/17DAP | 1.04895 | 0.842 |
39DAP/27DAP | 0.91553 | 0.477 |
41DAP/39DAP | 1.02999 | 0.801 |
42DAP/41DAP | 0.96591 | 0.721 |
43DAP/42DAP | 0.99889 | 1 |
47DAP/43DAP | 0.97314 | 0.774 |
52DAP/47DAP | 1.00416 | 1 |
57DAP/52DAP | 0.98121 | 0.75 |
57DAP/7DAP | 0.98308 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23695 | 0.054 |
17DAP/reference | 1.5702 | 0.006 |
27DAP/reference | 1.56085 | 0.01 |
39DAP/reference | 1.6435 | 0.006 |
41DAP/reference | 1.55809 | 0.015 |
42DAP/reference | 1.96645 | 0.006 |
43DAP/reference | 1.99052 | 0.006 |
47DAP/reference | 1.29124 | 0.504 |
52DAP/reference | 1.88536 | 0.007 |
57DAP/reference | 1.75979 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95993 | 0.564 |
17DAP/reference | 0.95916 | 0.26 |
27DAP/reference | 1.21576 | 1 |
39DAP/reference | 0.93525 | 0.214 |
41DAP/reference | 0.86437 | 0.156 |
42DAP/reference | 0.85946 | |
43DAP/reference | 0.93917 | 0.45 |
47DAP/reference | 1.01646 | |
52DAP/reference | 0.97618 | 0.38 |
57DAP/reference | 0.99573 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07151 | 0.56 |
17DAP/reference | 1.06405 | 0.675 |
27DAP/reference | 1.43457 | 0.017 |
39DAP/reference | 1.37329 | 0.018 |
41DAP/reference | 1.28788 | 0.038 |
42DAP/reference | 1.47688 | 0.01 |
43DAP/reference | 1.40653 | 0.055 |
47DAP/reference | 1.01112 | 0.966 |
52DAP/reference | 1.31633 | 0.161 |
57DAP/reference | 1.71987 | 0.385 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00541 | 0.966 |
26DAP/20DAP | 0.9957 | 1 |
34DAP/26DAP | 1.01774 | 1 |
51DAP/34DAP | 1.02467 | 0.909 |
52DAP/51DAP | 0.97299 | 1 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 0.91672 | 0.024 |
57DAP/55DAP | 0.88597 | 0.443 |
62DAP/57DAP | 0.99187 | 1 |
68DAP/62DAP | 0.93251 | 0.7 |
68DAP/14DAP | 1.38067 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98873 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.07469 | 0.666 |
Mature Green Tomato/Ripe Tomato | 0.87705 | 0.446 |
Immature Eggplant/Mature Eggplant | 0.80048 | 0.292 |
Ripe Pepper/Ripe Tomato | 5.37155 | 1 |
Mature Eggplant/Ripe Tomato | 2.54811 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02926 | 1 |
1-1-2/M82 | 0.99094 | 1 |
12-2/M82 | 0.91654 | 0.955 |
12-4/M82 | 0.97138 | 1 |
1-3/M82 | 1.03118 | 1 |
2-1-1/M82 | 0.92549 | 0.683 |
2-1/M82 | 0.97829 | |
2-6/M82 | 0.96224 | 1 |
3-2/M82 | 0.97854 | 0.752 |
4-1-1/M82 | 1.07052 | 1 |
4-1/M82 | 0.91787 | 0.665 |
4-3-2/M82 | 0.92836 | 1 |
4-3/M82 | 0.94464 | 0.72 |
5-3/M82 | 1.03573 | 0.572 |
6-2/M82 | 1.17559 | 1 |
6-3/M82 | 1.02935 | 1 |
7-1/M82 | 1.00909 | 1 |
7-2/M82 | 0.90049 | 0.796 |
9-3-2/M82 | 0.86986 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.22319 | 0.277 |
IL2-6/WTpooled | 0.83216 | 0.358 |
IL7-5/WTpooled | 1.00041 | 1 |
IL7-3/WTpooled | 0.85943 | 0.31 |
IL12-4/WTpooled | 1.07139 | 1 |
IL1-4/WTpooled | 0.74399 | 0.415 |
WT/WTpooled | 1.05031 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88245 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99328 | 1 |
DC3000/delta hrp 6h | 0.95496 | 0.95 |
DC3000/delta hrp 12h | 0.93948 | 1 |
DC3000/delta hrp 24h | 1.04118 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07047 | 0.476 |
DC3000 delta B/DC3000 delta AB | 1.0215 | 0.625 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78491 | 1 |
Exp 36h | 0.8328 | 0.539 |
Exp 60h | 0.96117 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03749 | 1 |
Var 0h | 0.39505 | 0.457 |
Var 12h I row2-row1 | 1.11364 | 0.242 |
Var 12h NI row2-row1 | 0.92729 | 0.488 |
Var 36h I row2-row1 | 0.78357 | 0.805 |
Var 36h NI row2-row1 | 0.97036 | 0.645 |
Var 60h I row2-row1 | 1.17446 | 1 |
Var 60h NI row2-row1 | 1.17997 | 0.904 |
Time course 0hI-0hNI | 1.00586 | 1 |
Time course 12hI-12hNI | 1.05657 | 0.714 |
Time course 36hI-36hNI | 0.96475 | 0.396 |
Time course 60hI-60hNI | 0.95511 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03343 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.37393 | 1 |
transgenic ySAMdc/azygous control (red) | 1.44526 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98966 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20918 | 0.14 |
Manapal/WT (break) | 1.45221 | 1 |
Manapal/WT (red) | 1.22429 | 0.222 |
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