Expression of 1-1-7.3.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.712710.04
27DAP/17DAP1.125320.849
39DAP/27DAP0.916170.564
41DAP/39DAP1.009611
42DAP/41DAP1.508850.471
43DAP/42DAP1.011860.937
47DAP/43DAP1.133680.776
52DAP/47DAP1.022670.964
57DAP/52DAP1.132360.833

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.370880.049
17DAP/reference1.030350.717
27DAP/reference1.049380.894
39DAP/reference1.126770.083
41DAP/reference1.159770.187
42DAP/reference0.996340.587
43DAP/reference1.226590.033
47DAP/reference1.251720.114
52DAP/reference0.929640.258
57DAP/reference1.003581

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.837890.085
27DAP/17DAP1.01980.973
39DAP/27DAP1.08780.659
41DAP/39DAP1.056850.837
42DAP/41DAP1.131220.571
43DAP/42DAP1.118440.212
47DAP/43DAP1.089570.272
52DAP/47DAP1.03450.915
57DAP/52DAP1.002130.902
57DAP/7DAP0.942991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.185240.213
17DAP/reference1.439890.02
27DAP/reference1.191960.02
39DAP/reference1.06010.391
41DAP/reference1.004131
42DAP/reference0.91760.117
43DAP/reference1.087410.344
47DAP/reference0.922550.222
52DAP/reference1.046510.832
57DAP/reference0.985410.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.327670.265
17DAP/reference0.99010.659
27DAP/reference1.209460.217
39DAP/reference1.061090.764
41DAP/reference1.038591
42DAP/reference1.095830.655
43DAP/reference1.102040.526
47DAP/reference1.054280.498
52DAP/reference0.911640.22
57DAP/reference0.952440.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.334520.016
17DAP/reference1.185780.169
27DAP/reference1.244110.057
39DAP/reference1.1630.055
41DAP/reference1.198520.086
42DAP/reference1.199220.094
43DAP/reference1.195780.343
47DAP/reference0.895150.066
52DAP/reference1.169470.201
57DAP/reference1.108040.856

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.874791
26DAP/20DAP0.805780.228
34DAP/26DAP1.180240.819
51DAP/34DAP1.100690.637
52DAP/51DAP1.031010.588
53DAP/52DAP1.012240.944
55DAP/53DAP1.066980.994
57DAP/55DAP1.075320.935
62DAP/57DAP0.950160.871
68DAP/62DAP1.022891
68DAP/14DAP1.203570.03

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.902630.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.744330.208
Mature Green Tomato/Ripe Tomato0.677850.256
Immature Eggplant/Mature Eggplant0.616670.062
Ripe Pepper/Ripe Tomato2.344981
Mature Eggplant/Ripe Tomato1.317820.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.313960.574
1-1-2/M820.998061
12-2/M821.036671
12-4/M820.946471
1-3/M821.024121
2-1-1/M821.180391
2-1/M820.879640.519
2-6/M821.46080.364
3-2/M821.0208
4-1-1/M820.947181
4-1/M821.008781
4-3-2/M821.154071
4-3/M821.343121
5-3/M820.896291
6-2/M821.289521
6-3/M820.989361
7-1/M821.16037
7-2/M821.127480.318
9-3-2/M821.018861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.642660.395
IL7-5/WTpooled2.15638
IL7-3/WTpooled1.246861
IL12-4/WTpooled1.197670.557
IL1-4/WTpooled1.250761
WT/WTpooled0.963771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.856390.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.743440.428
DC3000/delta hrp 6h1.037651
DC3000/delta hrp 12h0.925981
DC3000/delta hrp 24h0.865570.131

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.85080.485
DC3000 delta B/DC3000 delta AB0.900830.134

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.81421
Exp 36h0.695380.449
Exp 60h0.752940.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998021
Var 0h0.816550.782
Var 12h I row2-row10.877020.338
Var 12h NI row2-row10.93980.82
Var 36h I row2-row10.877070.805
Var 36h NI row2-row11.143071
Var 60h I row2-row11.04673
Var 60h NI row2-row11.104890.701
Time course 0hI-0hNI0.952130.702
Time course 12hI-12hNI1.027070.81
Time course 36hI-36hNI0.884430.051
Time course 60hI-60hNI0.411060.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.169430.213
transgenic ySAMdc/azygous control (breaker)1.092650.248
transgenic ySAMdc/azygous control (red)1.013751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003480.811

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.663880.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.921340.087
Manapal/WT (break)1.44840.183
Manapal/WT (red)1.04411