Expression of 1-1-7.3.12.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82155 | 0.253 |
27DAP/17DAP | 1.07884 | 0.873 |
39DAP/27DAP | 3.4542 | 0.052 |
41DAP/39DAP | 1.25474 | 0.584 |
42DAP/41DAP | 0.78284 | 0.774 |
43DAP/42DAP | 0.8775 | 0.705 |
47DAP/43DAP | 0.81793 | 0.449 |
52DAP/47DAP | 0.94597 | 0.821 |
57DAP/52DAP | 0.97755 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22551 | 0.278 |
17DAP/reference | 0.9956 | 0.819 |
27DAP/reference | 0.88381 | 0.249 |
39DAP/reference | 0.95152 | 0.575 |
41DAP/reference | 0.89006 | 0.114 |
42DAP/reference | 1.21321 | 0.005 |
43DAP/reference | 1.04512 | 0.646 |
47DAP/reference | 0.89207 | 0.032 |
52DAP/reference | 0.89745 | 0.237 |
57DAP/reference | 0.9569 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.53401 | 0.051 |
27DAP/17DAP | 1.25007 | 0.151 |
39DAP/27DAP | 1.01695 | 1 |
41DAP/39DAP | 1.36687 | 0.197 |
42DAP/41DAP | 0.76284 | 0.077 |
43DAP/42DAP | 1.77268 | 0.014 |
47DAP/43DAP | 0.98397 | 0.928 |
52DAP/47DAP | 0.99398 | 0.917 |
57DAP/52DAP | 1.97193 | 0.036 |
57DAP/7DAP | 1.23239 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68263 | 0.059 |
17DAP/reference | 1.215 | 0.092 |
27DAP/reference | 1.19802 | 0.02 |
39DAP/reference | 1.36129 | 0.009 |
41DAP/reference | 1.35205 | 0.023 |
42DAP/reference | 1.28525 | 0.03 |
43DAP/reference | 1.68621 | 0.006 |
47DAP/reference | 1.39714 | 0.03 |
52DAP/reference | 1.56986 | 0.007 |
57DAP/reference | 1.67206 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99489 | 0.869 |
17DAP/reference | 1.14033 | 0.032 |
27DAP/reference | 1.12669 | 0.562 |
39DAP/reference | 1.55822 | 0.011 |
41DAP/reference | 1.20429 | 0.166 |
42DAP/reference | 1.02806 | 1 |
43DAP/reference | 0.90161 | 0.298 |
47DAP/reference | 1.12384 | 0.482 |
52DAP/reference | 1.22177 | 0.013 |
57DAP/reference | 0.99151 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32166 | 0.034 |
17DAP/reference | 0.97085 | 0.624 |
27DAP/reference | 1.30426 | 0.02 |
39DAP/reference | 1.1785 | 0.01 |
41DAP/reference | 1.0801 | 0.521 |
42DAP/reference | 1.05887 | 0.743 |
43DAP/reference | 1.03381 | 0.923 |
47DAP/reference | 0.79479 | 0.013 |
52DAP/reference | 1.59031 | 0.105 |
57DAP/reference | 0.9586 | 0.359 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09144 | 0.966 |
26DAP/20DAP | 1.01476 | 1 |
34DAP/26DAP | 1.35438 | 0.19 |
51DAP/34DAP | 0.98106 | 0.856 |
52DAP/51DAP | 1.07799 | 0.742 |
53DAP/52DAP | 1.25864 | 0.594 |
55DAP/53DAP | 1.05676 | 1 |
57DAP/55DAP | 1.35066 | 0.805 |
62DAP/57DAP | 0.94702 | 0.871 |
68DAP/62DAP | 1.26391 | 0.707 |
68DAP/14DAP | 1.2981 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.91894 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.35569 | 0.019 |
Immature Eggplant/Mature Eggplant | 0.98349 | 0.808 |
Ripe Pepper/Ripe Tomato | 0.35744 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.58213 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.92645 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.35317 | 0.277 |
IL2-6/WTpooled | 0.8554 | 1 |
IL7-5/WTpooled | 1.46269 | 1 |
IL7-3/WTpooled | 1.31653 | 1 |
IL12-4/WTpooled | 1.37029 | 0.516 |
IL1-4/WTpooled | 1.41543 | 1 |
WT/WTpooled | 0.90665 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.37467 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00429 | 1 |
DC3000/delta hrp 6h | 1.2534 | 1 |
DC3000/delta hrp 12h | 1.11502 | 1 |
DC3000/delta hrp 24h | 1.22755 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.80387 | |
DC3000 delta B/DC3000 delta AB | 1.02115 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0917 | 1 |
Exp 36h | 1.12095 | 0.693 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08084 | 1 |
Var 0h | 1.04701 | 0.98 |
Var 12h I row2-row1 | 0.90337 | 0.467 |
Var 12h NI row2-row1 | 0.95937 | 0.627 |
Var 36h I row2-row1 | 1.04695 | 1 |
Var 36h NI row2-row1 | 1.15649 | 1 |
Var 60h I row2-row1 | 1.08857 | 0.543 |
Var 60h NI row2-row1 | 0.92724 | 1 |
Time course 0hI-0hNI | 1.01159 | 1 |
Time course 12hI-12hNI | 1.1075 | 0.43 |
Time course 36hI-36hNI | 1.32586 | 0.011 |
Time course 60hI-60hNI | 1.1022 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.63324 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 0.6841 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.86949 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98377 | 0.588 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99035 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.1227 | 1 |
Manapal/WT (break) | 1.18217 | 1 |
Manapal/WT (red) | N/A | N/A |
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