Expression of 1-1-7.3.12.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.821550.253
27DAP/17DAP1.078840.873
39DAP/27DAP3.45420.052
41DAP/39DAP1.254740.584
42DAP/41DAP0.782840.774
43DAP/42DAP0.87750.705
47DAP/43DAP0.817930.449
52DAP/47DAP0.945970.821
57DAP/52DAP0.977550.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.225510.278
17DAP/reference0.99560.819
27DAP/reference0.883810.249
39DAP/reference0.951520.575
41DAP/reference0.890060.114
42DAP/reference1.213210.005
43DAP/reference1.045120.646
47DAP/reference0.892070.032
52DAP/reference0.897450.237
57DAP/reference0.95690.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.534010.051
27DAP/17DAP1.250070.151
39DAP/27DAP1.016951
41DAP/39DAP1.366870.197
42DAP/41DAP0.762840.077
43DAP/42DAP1.772680.014
47DAP/43DAP0.983970.928
52DAP/47DAP0.993980.917
57DAP/52DAP1.971930.036
57DAP/7DAP1.232390.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.682630.059
17DAP/reference1.2150.092
27DAP/reference1.198020.02
39DAP/reference1.361290.009
41DAP/reference1.352050.023
42DAP/reference1.285250.03
43DAP/reference1.686210.006
47DAP/reference1.397140.03
52DAP/reference1.569860.007
57DAP/reference1.672060.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994890.869
17DAP/reference1.140330.032
27DAP/reference1.126690.562
39DAP/reference1.558220.011
41DAP/reference1.204290.166
42DAP/reference1.028061
43DAP/reference0.901610.298
47DAP/reference1.123840.482
52DAP/reference1.221770.013
57DAP/reference0.991510.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.321660.034
17DAP/reference0.970850.624
27DAP/reference1.304260.02
39DAP/reference1.17850.01
41DAP/reference1.08010.521
42DAP/reference1.058870.743
43DAP/reference1.033810.923
47DAP/reference0.794790.013
52DAP/reference1.590310.105
57DAP/reference0.95860.359

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.091440.966
26DAP/20DAP1.014761
34DAP/26DAP1.354380.19
51DAP/34DAP0.981060.856
52DAP/51DAP1.077990.742
53DAP/52DAP1.258640.594
55DAP/53DAP1.056761
57DAP/55DAP1.350660.805
62DAP/57DAP0.947020.871
68DAP/62DAP1.263910.707
68DAP/14DAP1.29810.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.918940.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.355690.019
Immature Eggplant/Mature Eggplant0.983490.808
Ripe Pepper/Ripe Tomato0.357440.293
Mature Eggplant/Ripe Tomato0.582130.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.92645
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.353170.277
IL2-6/WTpooled0.85541
IL7-5/WTpooled1.462691
IL7-3/WTpooled1.316531
IL12-4/WTpooled1.370290.516
IL1-4/WTpooled1.415431
WT/WTpooled0.906651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.374671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.004291
DC3000/delta hrp 6h1.25341
DC3000/delta hrp 12h1.115021
DC3000/delta hrp 24h1.227550.347

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.80387
DC3000 delta B/DC3000 delta AB1.021151

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.09171
Exp 36h1.120950.693
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.080841
Var 0h1.047010.98
Var 12h I row2-row10.903370.467
Var 12h NI row2-row10.959370.627
Var 36h I row2-row11.046951
Var 36h NI row2-row11.156491
Var 60h I row2-row11.088570.543
Var 60h NI row2-row10.927241
Time course 0hI-0hNI1.011591
Time course 12hI-12hNI1.10750.43
Time course 36hI-36hNI1.325860.011
Time course 60hI-60hNI1.10220.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.633240.318
transgenic ySAMdc/azygous control (breaker)0.68410.173
transgenic ySAMdc/azygous control (red)0.869491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.983770.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.990351

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.12271
Manapal/WT (break)1.182171
Manapal/WT (red)N/AN/A