Expression of 1-1-7.3.12.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.752270.452
27DAP/17DAP1.209440.911
39DAP/27DAP0.968820.769
41DAP/39DAP0.882520.771
42DAP/41DAP1.069071
43DAP/42DAP1.705880.993
47DAP/43DAP1.046730.934
52DAP/47DAP1.283630.876
57DAP/52DAP1.238380.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.45157
17DAP/referenceN/AN/A
27DAP/reference0.651550.018
39DAP/reference0.910550.527
41DAP/reference0.591520.085
42DAP/reference0.704920.176
43DAP/referenceN/AN/A
47DAP/reference1.3961
52DAP/reference0.9438
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.542110.185
27DAP/17DAP1.78975
39DAP/27DAP0.88185
41DAP/39DAP1.143751
42DAP/41DAP0.743260.434
43DAP/42DAP0.43766
47DAP/43DAP1.457310.92
52DAP/47DAP1.46348
57DAP/52DAP0.969670.773
57DAP/7DAP1.431751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.585090.063
17DAP/reference0.572930.012
27DAP/reference0.642480.012
39DAP/reference0.576630.011
41DAP/reference0.579330.011
42DAP/reference0.754810.095
43DAP/reference0.733910.011
47DAP/reference0.956870.671
52DAP/reference0.738480.022
57DAP/reference0.921110.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.331820.842
17DAP/reference1.525270.216
27DAP/reference1.00320.598
39DAP/reference0.837890.281
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference0.909930.43
47DAP/reference0.998210.749
52DAP/reference1.642510.279
57DAP/reference0.86698

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.708980.05
17DAP/reference0.949430.528
27DAP/reference0.643140.026
39DAP/reference0.885920.222
41DAP/reference0.726570.018
42DAP/reference0.679420.025
43DAP/reference0.639550.024
47DAP/reference1.239590.339
52DAP/reference0.697580.068
57DAP/reference1.00409

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.143020.966
26DAP/20DAP0.55132
34DAP/26DAP0.803180.192
51DAP/34DAP0.93802
52DAP/51DAP1.217640.733
53DAP/52DAP0.508030.049
55DAP/53DAP0.862950.325
57DAP/55DAPN/AN/A
62DAP/57DAP2.013220.003
68DAP/62DAPN/AN/A
68DAP/14DAP0.72435

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.017040.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.083030.277
IL2-6/WTpooled1.139370.419
IL7-5/WTpooled1.002181
IL7-3/WTpooled0.951510.418
IL12-4/WTpooled0.886720.581
IL1-4/WTpooled1.018731
WT/WTpooled0.896881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.79772
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.04510.374
Var 12h I row2-row10.89556
Var 12h NI row2-row11.16122
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.79730.378
Var 60h I row2-row11.17810.562
Var 60h NI row2-row10.88949
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.299991
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A