Expression of 1-1-7.3.12.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.75227 | 0.452 |
27DAP/17DAP | 1.20944 | 0.911 |
39DAP/27DAP | 0.96882 | 0.769 |
41DAP/39DAP | 0.88252 | 0.771 |
42DAP/41DAP | 1.06907 | 1 |
43DAP/42DAP | 1.70588 | 0.993 |
47DAP/43DAP | 1.04673 | 0.934 |
52DAP/47DAP | 1.28363 | 0.876 |
57DAP/52DAP | 1.23838 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.45157 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.65155 | 0.018 |
39DAP/reference | 0.91055 | 0.527 |
41DAP/reference | 0.59152 | 0.085 |
42DAP/reference | 0.70492 | 0.176 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.396 | 1 |
52DAP/reference | 0.9438 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.54211 | 0.185 |
27DAP/17DAP | 1.78975 | |
39DAP/27DAP | 0.88185 | |
41DAP/39DAP | 1.14375 | 1 |
42DAP/41DAP | 0.74326 | 0.434 |
43DAP/42DAP | 0.43766 | |
47DAP/43DAP | 1.45731 | 0.92 |
52DAP/47DAP | 1.46348 | |
57DAP/52DAP | 0.96967 | 0.773 |
57DAP/7DAP | 1.43175 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.58509 | 0.063 |
17DAP/reference | 0.57293 | 0.012 |
27DAP/reference | 0.64248 | 0.012 |
39DAP/reference | 0.57663 | 0.011 |
41DAP/reference | 0.57933 | 0.011 |
42DAP/reference | 0.75481 | 0.095 |
43DAP/reference | 0.73391 | 0.011 |
47DAP/reference | 0.95687 | 0.671 |
52DAP/reference | 0.73848 | 0.022 |
57DAP/reference | 0.92111 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33182 | 0.842 |
17DAP/reference | 1.52527 | 0.216 |
27DAP/reference | 1.0032 | 0.598 |
39DAP/reference | 0.83789 | 0.281 |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.90993 | 0.43 |
47DAP/reference | 0.99821 | 0.749 |
52DAP/reference | 1.64251 | 0.279 |
57DAP/reference | 0.86698 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70898 | 0.05 |
17DAP/reference | 0.94943 | 0.528 |
27DAP/reference | 0.64314 | 0.026 |
39DAP/reference | 0.88592 | 0.222 |
41DAP/reference | 0.72657 | 0.018 |
42DAP/reference | 0.67942 | 0.025 |
43DAP/reference | 0.63955 | 0.024 |
47DAP/reference | 1.23959 | 0.339 |
52DAP/reference | 0.69758 | 0.068 |
57DAP/reference | 1.00409 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14302 | 0.966 |
26DAP/20DAP | 0.55132 | |
34DAP/26DAP | 0.80318 | 0.192 |
51DAP/34DAP | 0.93802 | |
52DAP/51DAP | 1.21764 | 0.733 |
53DAP/52DAP | 0.50803 | 0.049 |
55DAP/53DAP | 0.86295 | 0.325 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 2.01322 | 0.003 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 0.72435 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.01704 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.08303 | 0.277 |
IL2-6/WTpooled | 1.13937 | 0.419 |
IL7-5/WTpooled | 1.00218 | 1 |
IL7-3/WTpooled | 0.95151 | 0.418 |
IL12-4/WTpooled | 0.88672 | 0.581 |
IL1-4/WTpooled | 1.01873 | 1 |
WT/WTpooled | 0.89688 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.79772 | |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.0451 | 0.374 |
Var 12h I row2-row1 | 0.89556 | |
Var 12h NI row2-row1 | 1.16122 | |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.7973 | 0.378 |
Var 60h I row2-row1 | 1.1781 | 0.562 |
Var 60h NI row2-row1 | 0.88949 | |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29999 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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