Expression of 1-1-7.3.13.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001920.77
27DAP/17DAP1.338890.728
39DAP/27DAP1.552560.566
41DAP/39DAP1.297310.753
42DAP/41DAP1.379910.647
43DAP/42DAP0.734650.709
47DAP/43DAP1.640140.216
52DAP/47DAP1.807940.127
57DAP/52DAP1.116580.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.807440.026
17DAP/reference0.818350.007
27DAP/reference0.899480.314
39DAP/reference0.967340.691
41DAP/reference0.916160.341
42DAP/reference0.84120.003
43DAP/reference0.854660.067
47DAP/reference0.962460.345
52DAP/reference1.12980.079
57DAP/reference1.201830.015

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.753630.27
27DAP/17DAP1.158750.754
39DAP/27DAP1.778490.129
41DAP/39DAP1.16470.827
42DAP/41DAP1.205330.869
43DAP/42DAP1.570310.382
47DAP/43DAP1.030010.892
52DAP/47DAP1.330930.356
57DAP/52DAP1.120430.818
57DAP/7DAP0.755341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.843040.115
17DAP/reference0.900140.144
27DAP/reference0.974350.348
39DAP/reference1.012810.745
41DAP/reference0.855520.133
42DAP/reference0.968590.458
43DAP/reference0.896410.175
47DAP/reference0.860220.222
52DAP/reference0.7340.026
57DAP/reference0.807520.041

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.825240.069
17DAP/reference0.815170.011
27DAP/reference0.973570.501
39DAP/reference0.875470.144
41DAP/reference0.922340.199
42DAP/reference1.017971
43DAP/reference1.085360.845
47DAP/reference1.043710.675
52DAP/reference0.881820.02
57DAP/reference0.768920.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872970.077
17DAP/reference1.043330.602
27DAP/reference1.130370.1
39DAP/reference1.076820.563
41DAP/reference0.85950.027
42DAP/reference0.904350.172
43DAP/reference0.849660.057
47DAP/reference0.894080.153
52DAP/reference1.465770.412
57DAP/reference1.152680.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.315070.966
26DAP/20DAP0.77060.317
34DAP/26DAP1.533291
51DAP/34DAP1.27865
52DAP/51DAP1.062691
53DAP/52DAP1.996370.444
55DAP/53DAP1.07188
57DAP/55DAP1.561740.626
62DAP/57DAP0.910430.871
68DAP/62DAP0.975820.863
68DAP/14DAP0.742970.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.518190.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.04940.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.17960.224
Mature Eggplant/Ripe Tomato0.138691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.234940.742
1-1-2/M820.989491
12-2/M821.06767
12-4/M821.275720.694
1-3/M820.988341
2-1-1/M821.010681
2-1/M820.93302
2-6/M820.974871
3-2/M82N/AN/A
4-1-1/M820.902231
4-1/M821.31656
4-3-2/M820.79563
4-3/M821.06821
5-3/M820.953751
6-2/M820.6891
6-3/M820.940811
7-1/M820.92171
7-2/M820.968171
9-3-2/M821.46358

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.847120.247
IL2-6/WTpooled0.957721
IL7-5/WTpooled0.60741
IL7-3/WTpooled0.99791
IL12-4/WTpooled0.990221
IL1-4/WTpooled0.998691
WT/WTpooled1.020741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.951
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.924561
DC3000/delta hrp 24h1.032280.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.04831
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.15731
Var 0h0.899270.226
Var 12h I row2-row11.15839
Var 12h NI row2-row10.64914
Var 36h I row2-row10.74222
Var 36h NI row2-row11.08791
Var 60h I row2-row11.028061
Var 60h NI row2-row10.847660.329
Time course 0hI-0hNI1.00830.867
Time course 12hI-12hNI1.488640.313
Time course 36hI-36hNI0.909230.403
Time course 60hI-60hNI0.98161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.406570.272
transgenic ySAMdc/azygous control (breaker)1.315640.248
transgenic ySAMdc/azygous control (red)1.021250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.961590.056

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.444720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.086281
Manapal/WT (break)1.20040.381
Manapal/WT (red)0.942180.36