Expression of 1-1-7.3.13.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00192 | 0.77 |
27DAP/17DAP | 1.33889 | 0.728 |
39DAP/27DAP | 1.55256 | 0.566 |
41DAP/39DAP | 1.29731 | 0.753 |
42DAP/41DAP | 1.37991 | 0.647 |
43DAP/42DAP | 0.73465 | 0.709 |
47DAP/43DAP | 1.64014 | 0.216 |
52DAP/47DAP | 1.80794 | 0.127 |
57DAP/52DAP | 1.11658 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80744 | 0.026 |
17DAP/reference | 0.81835 | 0.007 |
27DAP/reference | 0.89948 | 0.314 |
39DAP/reference | 0.96734 | 0.691 |
41DAP/reference | 0.91616 | 0.341 |
42DAP/reference | 0.8412 | 0.003 |
43DAP/reference | 0.85466 | 0.067 |
47DAP/reference | 0.96246 | 0.345 |
52DAP/reference | 1.1298 | 0.079 |
57DAP/reference | 1.20183 | 0.015 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75363 | 0.27 |
27DAP/17DAP | 1.15875 | 0.754 |
39DAP/27DAP | 1.77849 | 0.129 |
41DAP/39DAP | 1.1647 | 0.827 |
42DAP/41DAP | 1.20533 | 0.869 |
43DAP/42DAP | 1.57031 | 0.382 |
47DAP/43DAP | 1.03001 | 0.892 |
52DAP/47DAP | 1.33093 | 0.356 |
57DAP/52DAP | 1.12043 | 0.818 |
57DAP/7DAP | 0.75534 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84304 | 0.115 |
17DAP/reference | 0.90014 | 0.144 |
27DAP/reference | 0.97435 | 0.348 |
39DAP/reference | 1.01281 | 0.745 |
41DAP/reference | 0.85552 | 0.133 |
42DAP/reference | 0.96859 | 0.458 |
43DAP/reference | 0.89641 | 0.175 |
47DAP/reference | 0.86022 | 0.222 |
52DAP/reference | 0.734 | 0.026 |
57DAP/reference | 0.80752 | 0.041 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82524 | 0.069 |
17DAP/reference | 0.81517 | 0.011 |
27DAP/reference | 0.97357 | 0.501 |
39DAP/reference | 0.87547 | 0.144 |
41DAP/reference | 0.92234 | 0.199 |
42DAP/reference | 1.01797 | 1 |
43DAP/reference | 1.08536 | 0.845 |
47DAP/reference | 1.04371 | 0.675 |
52DAP/reference | 0.88182 | 0.02 |
57DAP/reference | 0.76892 | 0.058 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87297 | 0.077 |
17DAP/reference | 1.04333 | 0.602 |
27DAP/reference | 1.13037 | 0.1 |
39DAP/reference | 1.07682 | 0.563 |
41DAP/reference | 0.8595 | 0.027 |
42DAP/reference | 0.90435 | 0.172 |
43DAP/reference | 0.84966 | 0.057 |
47DAP/reference | 0.89408 | 0.153 |
52DAP/reference | 1.46577 | 0.412 |
57DAP/reference | 1.15268 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31507 | 0.966 |
26DAP/20DAP | 0.7706 | 0.317 |
34DAP/26DAP | 1.53329 | 1 |
51DAP/34DAP | 1.27865 | |
52DAP/51DAP | 1.06269 | 1 |
53DAP/52DAP | 1.99637 | 0.444 |
55DAP/53DAP | 1.07188 | |
57DAP/55DAP | 1.56174 | 0.626 |
62DAP/57DAP | 0.91043 | 0.871 |
68DAP/62DAP | 0.97582 | 0.863 |
68DAP/14DAP | 0.74297 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.51819 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.0494 | 0.021 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.1796 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13869 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.23494 | 0.742 |
1-1-2/M82 | 0.98949 | 1 |
12-2/M82 | 1.06767 | |
12-4/M82 | 1.27572 | 0.694 |
1-3/M82 | 0.98834 | 1 |
2-1-1/M82 | 1.01068 | 1 |
2-1/M82 | 0.93302 | |
2-6/M82 | 0.97487 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.90223 | 1 |
4-1/M82 | 1.31656 | |
4-3-2/M82 | 0.79563 | |
4-3/M82 | 1.0682 | 1 |
5-3/M82 | 0.95375 | 1 |
6-2/M82 | 0.689 | 1 |
6-3/M82 | 0.94081 | 1 |
7-1/M82 | 0.92171 | |
7-2/M82 | 0.96817 | 1 |
9-3-2/M82 | 1.46358 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84712 | 0.247 |
IL2-6/WTpooled | 0.95772 | 1 |
IL7-5/WTpooled | 0.6074 | 1 |
IL7-3/WTpooled | 0.9979 | 1 |
IL12-4/WTpooled | 0.99022 | 1 |
IL1-4/WTpooled | 0.99869 | 1 |
WT/WTpooled | 1.02074 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.92456 | 1 |
DC3000/delta hrp 24h | 1.03228 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0483 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.15731 | |
Var 0h | 0.89927 | 0.226 |
Var 12h I row2-row1 | 1.15839 | |
Var 12h NI row2-row1 | 0.64914 | |
Var 36h I row2-row1 | 0.74222 | |
Var 36h NI row2-row1 | 1.08791 | |
Var 60h I row2-row1 | 1.02806 | 1 |
Var 60h NI row2-row1 | 0.84766 | 0.329 |
Time course 0hI-0hNI | 1.0083 | 0.867 |
Time course 12hI-12hNI | 1.48864 | 0.313 |
Time course 36hI-36hNI | 0.90923 | 0.403 |
Time course 60hI-60hNI | 0.9816 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.40657 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.31564 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.02125 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96159 | 0.056 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.44472 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08628 | 1 |
Manapal/WT (break) | 1.2004 | 0.381 |
Manapal/WT (red) | 0.94218 | 0.36 |
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