Expression of 1-1-7.3.14.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67672 | 0.033 |
27DAP/17DAP | 0.88009 | 0.626 |
39DAP/27DAP | 1.10229 | 1 |
41DAP/39DAP | 0.89273 | 0.566 |
42DAP/41DAP | 1.30399 | 0.458 |
43DAP/42DAP | 1.19849 | 0.768 |
47DAP/43DAP | 1.05399 | 0.959 |
52DAP/47DAP | 1.06632 | 0.963 |
57DAP/52DAP | 0.96619 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23202 | 0.085 |
17DAP/reference | 1.03511 | 0.764 |
27DAP/reference | 1.08449 | 0.539 |
39DAP/reference | 1.12951 | 0.224 |
41DAP/reference | 0.84306 | 0.154 |
42DAP/reference | 0.90619 | 0.069 |
43DAP/reference | 0.9089 | 0.259 |
47DAP/reference | 0.88197 | 0.137 |
52DAP/reference | 0.92421 | 0.3 |
57DAP/reference | 1.07999 | 0.344 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92796 | 0.428 |
27DAP/17DAP | 0.86697 | 0.218 |
39DAP/27DAP | 0.80051 | 0.088 |
41DAP/39DAP | 0.91937 | 0.804 |
42DAP/41DAP | 1.09976 | 0.984 |
43DAP/42DAP | 1.25691 | 0.513 |
47DAP/43DAP | 0.89782 | 0.506 |
52DAP/47DAP | 0.91495 | 0.763 |
57DAP/52DAP | 0.88482 | 0.473 |
57DAP/7DAP | 0.77526 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98598 | 0.613 |
17DAP/reference | 0.92134 | 0.167 |
27DAP/reference | 1.13084 | 0.804 |
39DAP/reference | 0.83696 | 0.015 |
41DAP/reference | 0.77506 | 0.021 |
42DAP/reference | 0.73924 | 0.013 |
43DAP/reference | 0.88357 | 0.22 |
47DAP/reference | 0.85146 | 0.222 |
52DAP/reference | 0.80979 | 0.017 |
57DAP/reference | 0.80325 | 0.097 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31825 | 0.064 |
17DAP/reference | 1.03389 | 1 |
27DAP/reference | 1.13835 | 0.235 |
39DAP/reference | 0.94382 | 0.381 |
41DAP/reference | 0.96804 | 0.451 |
42DAP/reference | 1.0812 | 0.759 |
43DAP/reference | 1.1072 | 0.713 |
47DAP/reference | 1.08186 | 0.712 |
52DAP/reference | 0.72093 | 0.078 |
57DAP/reference | 0.79381 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17863 | 0.034 |
17DAP/reference | 1.07493 | 0.545 |
27DAP/reference | 0.97311 | 0.49 |
39DAP/reference | 0.89788 | 0.163 |
41DAP/reference | 0.9283 | 0.293 |
42DAP/reference | 1.17629 | 0.327 |
43DAP/reference | 0.92081 | 0.188 |
47DAP/reference | 0.94676 | 0.371 |
52DAP/reference | 0.90931 | 0.424 |
57DAP/reference | 1.01485 | 0.753 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.62268 | 0.966 |
26DAP/20DAP | 1.0472 | 0.865 |
34DAP/26DAP | 0.95352 | 0.861 |
51DAP/34DAP | 1.44149 | 0.033 |
52DAP/51DAP | 1.10592 | 0.565 |
53DAP/52DAP | 0.83497 | 0.235 |
55DAP/53DAP | 0.73164 | 0.14 |
57DAP/55DAP | 0.98717 | 0.855 |
62DAP/57DAP | 0.84321 | 0.681 |
68DAP/62DAP | 1.13139 | 0.405 |
68DAP/14DAP | 1.33797 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83777 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72432 | 0.199 |
Mature Green Tomato/Ripe Tomato | 1.01987 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.57737 | 0.063 |
Ripe Pepper/Ripe Tomato | 2.92959 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.47495 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.24024 | 0.591 |
1-1-2/M82 | 1.05652 | 0.977 |
12-2/M82 | 1.01081 | 1 |
12-4/M82 | 0.85247 | 0.358 |
1-3/M82 | 1.18215 | |
2-1-1/M82 | 1.08275 | |
2-1/M82 | 0.89097 | |
2-6/M82 | 1.19073 | 0.374 |
3-2/M82 | 1.32634 | |
4-1-1/M82 | 1.11958 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.50052 | 0.241 |
4-3/M82 | 1.57207 | 0.268 |
5-3/M82 | 0.8799 | 1 |
6-2/M82 | 1.51531 | 1 |
6-3/M82 | 0.99153 | 1 |
7-1/M82 | 1.05759 | 1 |
7-2/M82 | 1.2838 | |
9-3-2/M82 | 1.32995 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98701 | 1 |
IL2-6/WTpooled | 0.43353 | |
IL7-5/WTpooled | 1.47788 | |
IL7-3/WTpooled | 1.1242 | 1 |
IL12-4/WTpooled | 1.34232 | 0.516 |
IL1-4/WTpooled | 1.01974 | 1 |
WT/WTpooled | 1.04401 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14438 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.80743 | 0.807 |
DC3000/delta hrp 6h | 1.1258 | 1 |
DC3000/delta hrp 12h | 0.95251 | 1 |
DC3000/delta hrp 24h | 0.72028 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.61232 | |
DC3000 delta B/DC3000 delta AB | 0.66982 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.7174 | 1 |
Exp 36h | 0.44463 | 0.366 |
Exp 60h | 0.60918 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02701 | 1 |
Var 0h | 0.99536 | 1 |
Var 12h I row2-row1 | 0.76969 | 0.338 |
Var 12h NI row2-row1 | 0.96098 | 0.906 |
Var 36h I row2-row1 | 0.61547 | 0.805 |
Var 36h NI row2-row1 | 1.09243 | 1 |
Var 60h I row2-row1 | 1.06671 | 0.562 |
Var 60h NI row2-row1 | 1.16459 | 0.904 |
Time course 0hI-0hNI | 0.98695 | 0.985 |
Time course 12hI-12hNI | 1.04493 | 0.743 |
Time course 36hI-36hNI | 0.78412 | 0.023 |
Time course 60hI-60hNI | 0.10914 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21272 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.12102 | 1 |
transgenic ySAMdc/azygous control (red) | 1.06248 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98924 | 0.486 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.03687 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.04642 | 0.083 |
Manapal/WT (break) | 1.51932 | 0.14 |
Manapal/WT (red) | 0.95034 | 0.728 |
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