Expression of 1-1-7.3.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.676720.033
27DAP/17DAP0.880090.626
39DAP/27DAP1.102291
41DAP/39DAP0.892730.566
42DAP/41DAP1.303990.458
43DAP/42DAP1.198490.768
47DAP/43DAP1.053990.959
52DAP/47DAP1.066320.963
57DAP/52DAP0.966190.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.232020.085
17DAP/reference1.035110.764
27DAP/reference1.084490.539
39DAP/reference1.129510.224
41DAP/reference0.843060.154
42DAP/reference0.906190.069
43DAP/reference0.90890.259
47DAP/reference0.881970.137
52DAP/reference0.924210.3
57DAP/reference1.079990.344

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.927960.428
27DAP/17DAP0.866970.218
39DAP/27DAP0.800510.088
41DAP/39DAP0.919370.804
42DAP/41DAP1.099760.984
43DAP/42DAP1.256910.513
47DAP/43DAP0.897820.506
52DAP/47DAP0.914950.763
57DAP/52DAP0.884820.473
57DAP/7DAP0.775261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.985980.613
17DAP/reference0.921340.167
27DAP/reference1.130840.804
39DAP/reference0.836960.015
41DAP/reference0.775060.021
42DAP/reference0.739240.013
43DAP/reference0.883570.22
47DAP/reference0.851460.222
52DAP/reference0.809790.017
57DAP/reference0.803250.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.318250.064
17DAP/reference1.033891
27DAP/reference1.138350.235
39DAP/reference0.943820.381
41DAP/reference0.968040.451
42DAP/reference1.08120.759
43DAP/reference1.10720.713
47DAP/reference1.081860.712
52DAP/reference0.720930.078
57DAP/reference0.793810.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.178630.034
17DAP/reference1.074930.545
27DAP/reference0.973110.49
39DAP/reference0.897880.163
41DAP/reference0.92830.293
42DAP/reference1.176290.327
43DAP/reference0.920810.188
47DAP/reference0.946760.371
52DAP/reference0.909310.424
57DAP/reference1.014850.753

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.622680.966
26DAP/20DAP1.04720.865
34DAP/26DAP0.953520.861
51DAP/34DAP1.441490.033
52DAP/51DAP1.105920.565
53DAP/52DAP0.834970.235
55DAP/53DAP0.731640.14
57DAP/55DAP0.987170.855
62DAP/57DAP0.843210.681
68DAP/62DAP1.131390.405
68DAP/14DAP1.337970.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.837770.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.724320.199
Mature Green Tomato/Ripe Tomato1.019870.774
Immature Eggplant/Mature Eggplant0.577370.063
Ripe Pepper/Ripe Tomato2.929590.258
Mature Eggplant/Ripe Tomato1.474950.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.240240.591
1-1-2/M821.056520.977
12-2/M821.010811
12-4/M820.852470.358
1-3/M821.18215
2-1-1/M821.08275
2-1/M820.89097
2-6/M821.190730.374
3-2/M821.32634
4-1-1/M821.119581
4-1/M82N/AN/A
4-3-2/M821.500520.241
4-3/M821.572070.268
5-3/M820.87991
6-2/M821.515311
6-3/M820.991531
7-1/M821.057591
7-2/M821.2838
9-3-2/M821.329950.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.987011
IL2-6/WTpooled0.43353
IL7-5/WTpooled1.47788
IL7-3/WTpooled1.12421
IL12-4/WTpooled1.342320.516
IL1-4/WTpooled1.019741
WT/WTpooled1.044011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.144381

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.807430.807
DC3000/delta hrp 6h1.12581
DC3000/delta hrp 12h0.952511
DC3000/delta hrp 24h0.720280.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.61232
DC3000 delta B/DC3000 delta AB0.669820.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.71741
Exp 36h0.444630.366
Exp 60h0.609180.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.027011
Var 0h0.995361
Var 12h I row2-row10.769690.338
Var 12h NI row2-row10.960980.906
Var 36h I row2-row10.615470.805
Var 36h NI row2-row11.092431
Var 60h I row2-row11.066710.562
Var 60h NI row2-row11.164590.904
Time course 0hI-0hNI0.986950.985
Time course 12hI-12hNI1.044930.743
Time course 36hI-36hNI0.784120.023
Time course 60hI-60hNI0.109140.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.212720.272
transgenic ySAMdc/azygous control (breaker)1.121021
transgenic ySAMdc/azygous control (red)1.062480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.989240.486

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.036870.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.046420.083
Manapal/WT (break)1.519320.14
Manapal/WT (red)0.950340.728