Expression of 1-1-7.3.14.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.002040.858
27DAP/17DAP1.156360.902
39DAP/27DAP0.88440.529
41DAP/39DAP0.775070.274
42DAP/41DAP1.087430.941
43DAP/42DAP0.972870.925
47DAP/43DAP1.08370.965
52DAP/47DAP1.018070.814
57DAP/52DAP0.916430.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.203810.121
17DAP/reference0.944640.503
27DAP/reference1.057180.75
39DAP/reference1.059020.722
41DAP/reference0.790140.031
42DAP/reference0.937580.25
43DAP/reference0.957330.316
47DAP/reference1.014170.764
52DAP/reference1.006280.668
57DAP/reference1.041580.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246850.236
27DAP/17DAP1.05760.932
39DAP/27DAP1.042850.718
41DAP/39DAP1.146950.674
42DAP/41DAP1.060040.916
43DAP/42DAP0.894930.399
47DAP/43DAP1.127640.262
52DAP/47DAP1.045040.862
57DAP/52DAP1.088580.662
57DAP/7DAP1.293931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.611160.029
17DAP/reference1.521330.015
27DAP/reference1.546330.008
39DAP/reference1.649570.008
41DAP/reference1.477350.028
42DAP/reference1.531240.014
43DAP/reference1.515040.007
47DAP/reference1.214890.337
52DAP/reference1.242370.066
57DAP/reference1.191310.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.303160.09
17DAP/reference1.174540.049
27DAP/reference1.026010.735
39DAP/reference0.965460.455
41DAP/reference1.048030.981
42DAP/reference1.036571
43DAP/reference1.003080.67
47DAP/reference0.931770.284
52DAP/reference1.00590.666
57DAP/reference0.926510.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.654490.021
17DAP/reference1.083480.784
27DAP/reference1.429760.052
39DAP/reference1.248610.012
41DAP/reference1.22610.145
42DAP/reference1.167950.163
43DAP/reference1.08290.617
47DAP/reference0.981550.538
52DAP/reference1.941170.08
57DAP/reference1.32360.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.281740.817
26DAP/20DAP1.317170.558
34DAP/26DAP0.902210.575
51DAP/34DAP1.208370.224
52DAP/51DAP0.969971
53DAP/52DAP0.64650.194
55DAP/53DAP0.887660.478
57DAP/55DAP1.278060.559
62DAP/57DAP1.061870.935
68DAP/62DAP0.599480.505
68DAP/14DAP1.212620.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.863320.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.341250.058
Mature Green Tomato/Ripe Tomato1.916440.478
Immature Eggplant/Mature Eggplant0.767190.063
Ripe Pepper/Ripe Tomato1.664771
Mature Eggplant/Ripe Tomato3.666780.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.75588
12-2/M82N/AN/A
12-4/M820.82779
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.06159
3-2/M820.96808
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.00845
4-3/M821.095891
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M820.98522
7-1/M821.05798
7-2/M82N/AN/A
9-3-2/M821.05916

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.821450.358
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.00631
IL12-4/WTpooled0.991511
IL1-4/WTpooled1.04811
WT/WTpooled0.977921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.916190.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947151
DC3000/delta hrp 6h1.197381
DC3000/delta hrp 12h0.878481
DC3000/delta hrp 24h0.99827

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.68192
DC3000 delta B/DC3000 delta AB1.23450.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953551
Exp 36h0.946310.749
Exp 60h0.937060.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.033951
Var 0h0.985421
Var 12h I row2-row10.864750.338
Var 12h NI row2-row11.042851
Var 36h I row2-row10.900391
Var 36h NI row2-row10.778560.549
Var 60h I row2-row11.029811
Var 60h NI row2-row10.920460.977
Time course 0hI-0hNI1.045660.852
Time course 12hI-12hNI1.093260.639
Time course 36hI-36hNI1.019310.975
Time course 60hI-60hNI0.759230.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.081930.268
transgenic ySAMdc/azygous control (breaker)1.038881
transgenic ySAMdc/azygous control (red)1.017510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.094480.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.019561

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.786681
Manapal/WT (break)1.272330.381
Manapal/WT (red)1.062031