Expression of 1-1-7.3.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246860.325
27DAP/17DAP0.961470.928
39DAP/27DAP0.898950.62
41DAP/39DAP0.917230.638
42DAP/41DAP0.864071
43DAP/42DAP1.085070.923
47DAP/43DAP1.137640.769
52DAP/47DAP0.864590.627
57DAP/52DAP0.954410.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.102140.121
17DAP/reference1.015750.546
27DAP/reference0.934390.232
39DAP/reference1.016340.691
41DAP/reference1.058860.451
42DAP/reference0.982210.278
43DAP/reference1.001351
47DAP/reference1.038150.167
52DAP/reference0.95320.202
57DAP/reference1.012461

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920230.402
27DAP/17DAP1.014650.967
39DAP/27DAP1.07463
41DAP/39DAP1.007010.914
42DAP/41DAP0.97630.797
43DAP/42DAP1.022340.351
47DAP/43DAP1.020720.88
52DAP/47DAP0.986440.925
57DAP/52DAP1.023160.899
57DAP/7DAP0.868831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036620.555
17DAP/reference1.159090.006
27DAP/reference1.165520.049
39DAP/reference1.254260.005
41DAP/reference1.303270.016
42DAP/reference1.359290.007
43DAP/reference1.435850.008
47DAP/reference1.051830.965
52DAP/reference1.340980.012
57DAP/reference1.256520.108

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.03540.47
17DAP/reference1.051780.127
27DAP/reference1.076010.543
39DAP/reference1.059530.29
41DAP/reference1.046990.657
42DAP/reference0.859090.355
43DAP/reference0.972450.581
47DAP/reference0.971030.311
52DAP/reference1.029140.368
57DAP/reference1.051830.214

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051430.386
17DAP/reference0.999250.9
27DAP/reference1.023540.695
39DAP/reference1.044220.218
41DAP/reference1.087930.181
42DAP/reference1.038790.743
43DAP/reference1.036540.688
47DAP/reference0.946590.109
52DAP/reference1.119340.306
57DAP/reference0.936980.346

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016471
26DAP/20DAP0.998191
34DAP/26DAP1.021731
51DAP/34DAP0.967670.785
52DAP/51DAP0.989881
53DAP/52DAP1.003991
55DAP/53DAP0.967690.462
57DAP/55DAP0.995090.944
62DAP/57DAP0.946080.681
68DAP/62DAP0.961340.787
68DAP/14DAP1.009370.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.968710.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.678240.176
Mature Green Tomato/Ripe Tomato1.926160.034
Immature Eggplant/Mature Eggplant0.27460.057
Ripe Pepper/Ripe Tomato1.491021
Mature Eggplant/Ripe Tomato3.987330.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.892331
12-2/M82N/AN/A
12-4/M821.120781
1-3/M82N/AN/A
2-1-1/M821.15093
2-1/M82N/AN/A
2-6/M821.40997
3-2/M82N/AN/A
4-1-1/M821.018111
4-1/M821.03921
4-3-2/M821.079321
4-3/M820.841611
5-3/M821.227091
6-2/M82N/AN/A
6-3/M821.35104
7-1/M821.03469
7-2/M820.873350.796
9-3-2/M820.881460.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.476910.277
IL2-6/WTpooled0.77471
IL7-5/WTpooled0.771141
IL7-3/WTpooled1.515871
IL12-4/WTpooled1.049720.891
IL1-4/WTpooled1.33370.421
WT/WTpooled0.982851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.983321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.23765
DC3000/delta hrp 6h1.021281
DC3000/delta hrp 12h0.738721
DC3000/delta hrp 24h0.705820.269

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.009461
DC3000 delta B/DC3000 delta AB0.902380.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.86091
Exp 36h1.183621
Exp 60h0.808260.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994461
Var 0h0.974611
Var 12h I row2-row10.89160.39
Var 12h NI row2-row10.935610.713
Var 36h I row2-row10.933250.575
Var 36h NI row2-row11.144431
Var 60h I row2-row11.090971
Var 60h NI row2-row10.976851
Time course 0hI-0hNI1.004321
Time course 12hI-12hNI0.975660.769
Time course 36hI-36hNI0.987740.484
Time course 60hI-60hNI0.90940.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.287080.232
transgenic ySAMdc/azygous control (breaker)1.277190.178
transgenic ySAMdc/azygous control (red)1.096481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.941750.093

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.104710.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.183790.307
Manapal/WT (break)1.269030.381
Manapal/WT (red)1.04331