Expression of 1-1-7.3.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24686 | 0.325 |
27DAP/17DAP | 0.96147 | 0.928 |
39DAP/27DAP | 0.89895 | 0.62 |
41DAP/39DAP | 0.91723 | 0.638 |
42DAP/41DAP | 0.86407 | 1 |
43DAP/42DAP | 1.08507 | 0.923 |
47DAP/43DAP | 1.13764 | 0.769 |
52DAP/47DAP | 0.86459 | 0.627 |
57DAP/52DAP | 0.95441 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10214 | 0.121 |
17DAP/reference | 1.01575 | 0.546 |
27DAP/reference | 0.93439 | 0.232 |
39DAP/reference | 1.01634 | 0.691 |
41DAP/reference | 1.05886 | 0.451 |
42DAP/reference | 0.98221 | 0.278 |
43DAP/reference | 1.00135 | 1 |
47DAP/reference | 1.03815 | 0.167 |
52DAP/reference | 0.9532 | 0.202 |
57DAP/reference | 1.01246 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92023 | 0.402 |
27DAP/17DAP | 1.01465 | 0.967 |
39DAP/27DAP | 1.07463 | |
41DAP/39DAP | 1.00701 | 0.914 |
42DAP/41DAP | 0.9763 | 0.797 |
43DAP/42DAP | 1.02234 | 0.351 |
47DAP/43DAP | 1.02072 | 0.88 |
52DAP/47DAP | 0.98644 | 0.925 |
57DAP/52DAP | 1.02316 | 0.899 |
57DAP/7DAP | 0.86883 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03662 | 0.555 |
17DAP/reference | 1.15909 | 0.006 |
27DAP/reference | 1.16552 | 0.049 |
39DAP/reference | 1.25426 | 0.005 |
41DAP/reference | 1.30327 | 0.016 |
42DAP/reference | 1.35929 | 0.007 |
43DAP/reference | 1.43585 | 0.008 |
47DAP/reference | 1.05183 | 0.965 |
52DAP/reference | 1.34098 | 0.012 |
57DAP/reference | 1.25652 | 0.108 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0354 | 0.47 |
17DAP/reference | 1.05178 | 0.127 |
27DAP/reference | 1.07601 | 0.543 |
39DAP/reference | 1.05953 | 0.29 |
41DAP/reference | 1.04699 | 0.657 |
42DAP/reference | 0.85909 | 0.355 |
43DAP/reference | 0.97245 | 0.581 |
47DAP/reference | 0.97103 | 0.311 |
52DAP/reference | 1.02914 | 0.368 |
57DAP/reference | 1.05183 | 0.214 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05143 | 0.386 |
17DAP/reference | 0.99925 | 0.9 |
27DAP/reference | 1.02354 | 0.695 |
39DAP/reference | 1.04422 | 0.218 |
41DAP/reference | 1.08793 | 0.181 |
42DAP/reference | 1.03879 | 0.743 |
43DAP/reference | 1.03654 | 0.688 |
47DAP/reference | 0.94659 | 0.109 |
52DAP/reference | 1.11934 | 0.306 |
57DAP/reference | 0.93698 | 0.346 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01647 | 1 |
26DAP/20DAP | 0.99819 | 1 |
34DAP/26DAP | 1.02173 | 1 |
51DAP/34DAP | 0.96767 | 0.785 |
52DAP/51DAP | 0.98988 | 1 |
53DAP/52DAP | 1.00399 | 1 |
55DAP/53DAP | 0.96769 | 0.462 |
57DAP/55DAP | 0.99509 | 0.944 |
62DAP/57DAP | 0.94608 | 0.681 |
68DAP/62DAP | 0.96134 | 0.787 |
68DAP/14DAP | 1.00937 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96871 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.67824 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.92616 | 0.034 |
Immature Eggplant/Mature Eggplant | 0.2746 | 0.057 |
Ripe Pepper/Ripe Tomato | 1.49102 | 1 |
Mature Eggplant/Ripe Tomato | 3.98733 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.89233 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.12078 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.15093 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.40997 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.01811 | 1 |
4-1/M82 | 1.0392 | 1 |
4-3-2/M82 | 1.07932 | 1 |
4-3/M82 | 0.84161 | 1 |
5-3/M82 | 1.22709 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.35104 | |
7-1/M82 | 1.03469 | |
7-2/M82 | 0.87335 | 0.796 |
9-3-2/M82 | 0.88146 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.47691 | 0.277 |
IL2-6/WTpooled | 0.7747 | 1 |
IL7-5/WTpooled | 0.77114 | 1 |
IL7-3/WTpooled | 1.51587 | 1 |
IL12-4/WTpooled | 1.04972 | 0.891 |
IL1-4/WTpooled | 1.3337 | 0.421 |
WT/WTpooled | 0.98285 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98332 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.23765 | |
DC3000/delta hrp 6h | 1.02128 | 1 |
DC3000/delta hrp 12h | 0.73872 | 1 |
DC3000/delta hrp 24h | 0.70582 | 0.269 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00946 | 1 |
DC3000 delta B/DC3000 delta AB | 0.90238 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8609 | 1 |
Exp 36h | 1.18362 | 1 |
Exp 60h | 0.80826 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99446 | 1 |
Var 0h | 0.97461 | 1 |
Var 12h I row2-row1 | 0.8916 | 0.39 |
Var 12h NI row2-row1 | 0.93561 | 0.713 |
Var 36h I row2-row1 | 0.93325 | 0.575 |
Var 36h NI row2-row1 | 1.14443 | 1 |
Var 60h I row2-row1 | 1.09097 | 1 |
Var 60h NI row2-row1 | 0.97685 | 1 |
Time course 0hI-0hNI | 1.00432 | 1 |
Time course 12hI-12hNI | 0.97566 | 0.769 |
Time course 36hI-36hNI | 0.98774 | 0.484 |
Time course 60hI-60hNI | 0.9094 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.28708 | 0.232 |
transgenic ySAMdc/azygous control (breaker) | 1.27719 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.09648 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94175 | 0.093 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.10471 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.18379 | 0.307 |
Manapal/WT (break) | 1.26903 | 0.381 |
Manapal/WT (red) | 1.0433 | 1 |
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