Expression of 1-1-7.3.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8037 | 0.244 |
27DAP/17DAP | 0.93121 | 0.73 |
39DAP/27DAP | 1.44826 | 0.073 |
41DAP/39DAP | 0.58078 | 0.045 |
42DAP/41DAP | 0.77661 | 1 |
43DAP/42DAP | 1.24593 | 0.823 |
47DAP/43DAP | 0.39658 | 0.049 |
52DAP/47DAP | 1.49098 | 0.421 |
57DAP/52DAP | 0.98488 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.7968 | 0.01 |
17DAP/reference | 1.0607 | 0.858 |
27DAP/reference | 0.64764 | 0.013 |
39DAP/reference | 0.72873 | 0.078 |
41DAP/reference | 0.73831 | 0.018 |
42DAP/reference | 1.16972 | 0.006 |
43DAP/reference | 0.81539 | 0.037 |
47DAP/reference | 0.85572 | 0.001 |
52DAP/reference | 0.52593 | 0.013 |
57DAP/reference | 0.70596 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80757 | 0.065 |
27DAP/17DAP | 1.08967 | 0.754 |
39DAP/27DAP | 0.74662 | 0.037 |
41DAP/39DAP | 1.14335 | 1 |
42DAP/41DAP | 1.05958 | 0.886 |
43DAP/42DAP | 0.92089 | 0.351 |
47DAP/43DAP | 0.93216 | 0.447 |
52DAP/47DAP | 0.60521 | 0.041 |
57DAP/52DAP | 0.83821 | 0.418 |
57DAP/7DAP | 0.30277 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.4878 | 0.024 |
17DAP/reference | 1.81862 | 0.006 |
27DAP/reference | 1.47207 | 0.007 |
39DAP/reference | 1.17521 | 0.053 |
41DAP/reference | 1.4826 | 0.013 |
42DAP/reference | 1.28565 | 0.076 |
43DAP/reference | 1.20416 | 0.083 |
47DAP/reference | 1.09974 | 0.595 |
52DAP/reference | 1.13071 | 0.599 |
57DAP/reference | 0.94821 | 0.353 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43387 | 0.213 |
17DAP/reference | 1.79193 | 0.008 |
27DAP/reference | 1.59368 | 0.061 |
39DAP/reference | 0.89684 | 0.202 |
41DAP/reference | 1.33451 | 0.014 |
42DAP/reference | 1.72271 | 0.007 |
43DAP/reference | 0.88684 | 0.336 |
47DAP/reference | 1.17467 | 0.182 |
52DAP/reference | 0.65661 | 0.005 |
57DAP/reference | 0.67389 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.00199 | 0.015 |
17DAP/reference | 1.58904 | 0.14 |
27DAP/reference | 1.38883 | 0.026 |
39DAP/reference | 1.43785 | 0.011 |
41DAP/reference | 1.14399 | 0.052 |
42DAP/reference | 1.16925 | 0.184 |
43DAP/reference | 1.27715 | 0.209 |
47DAP/reference | 0.59087 | 0.006 |
52DAP/reference | 0.97451 | 0.663 |
57DAP/reference | 1.05969 | 0.892 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08499 | 0.966 |
26DAP/20DAP | 1.54604 | 0.117 |
34DAP/26DAP | 0.85461 | 0.381 |
51DAP/34DAP | 0.81169 | 0.147 |
52DAP/51DAP | 0.96582 | 1 |
53DAP/52DAP | 0.93916 | 0.876 |
55DAP/53DAP | 1.06548 | 0.964 |
57DAP/55DAP | 1.18892 | 0.841 |
62DAP/57DAP | 0.98235 | 0.994 |
68DAP/62DAP | 1.07884 | 0.991 |
68DAP/14DAP | 0.82056 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 6.20371 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85374 | 0.323 |
Mature Green Tomato/Ripe Tomato | 2.17538 | |
Immature Eggplant/Mature Eggplant | 1.11659 | 0.348 |
Ripe Pepper/Ripe Tomato | 1.43996 | 1 |
Mature Eggplant/Ripe Tomato | 1.35221 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95886 | 0.944 |
1-1-2/M82 | 1.33314 | 1 |
12-2/M82 | 1.1664 | 1 |
12-4/M82 | 0.96782 | 1 |
1-3/M82 | 1.21793 | 0.479 |
2-1-1/M82 | 0.93544 | 0.92 |
2-1/M82 | 1.13001 | 1 |
2-6/M82 | 1.16812 | 0.505 |
3-2/M82 | 1.01427 | 1 |
4-1-1/M82 | 1.12964 | 1 |
4-1/M82 | 1.01743 | 1 |
4-3-2/M82 | 1.69311 | 0.241 |
4-3/M82 | 1.51471 | 0.268 |
5-3/M82 | 1.19014 | 1 |
6-2/M82 | 1.141 | 1 |
6-3/M82 | 0.98339 | 1 |
7-1/M82 | 1.0753 | 0.598 |
7-2/M82 | 1.08162 | 1 |
9-3-2/M82 | 1.29004 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.79786 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01371 | 1 |
IL12-4/WTpooled | 0.76551 | 0.539 |
IL1-4/WTpooled | 1.0908 | 1 |
WT/WTpooled | 1.01725 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12415 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9877 | 1 |
DC3000/delta hrp 6h | 1.17481 | 0.582 |
DC3000/delta hrp 12h | 1.31106 | 1 |
DC3000/delta hrp 24h | 1.11485 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.40759 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.41622 | 0.146 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.19655 | 1 |
Exp 36h | 1.19414 | 1 |
Exp 60h | 1.51894 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00241 | 1 |
Var 0h | 1.07655 | 0.339 |
Var 12h I row2-row1 | 0.94342 | 0.77 |
Var 12h NI row2-row1 | 1.07151 | 0.649 |
Var 36h I row2-row1 | 1.11762 | 0.742 |
Var 36h NI row2-row1 | 0.93067 | 0.61 |
Var 60h I row2-row1 | 0.82667 | 0.293 |
Var 60h NI row2-row1 | 0.86059 | 0.63 |
Time course 0hI-0hNI | 1.13031 | 0.377 |
Time course 12hI-12hNI | 1.0267 | 0.811 |
Time course 36hI-36hNI | 1.40291 | 0.011 |
Time course 60hI-60hNI | 1.75888 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07378 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.22929 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.17125 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15944 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7355 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05033 | 0.096 |
Manapal/WT (break) | 0.99893 | 1 |
Manapal/WT (red) | 0.86538 | 0.199 |
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