Expression of 1-1-7.3.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.80370.244
27DAP/17DAP0.931210.73
39DAP/27DAP1.448260.073
41DAP/39DAP0.580780.045
42DAP/41DAP0.776611
43DAP/42DAP1.245930.823
47DAP/43DAP0.396580.049
52DAP/47DAP1.490980.421
57DAP/52DAP0.984880.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.79680.01
17DAP/reference1.06070.858
27DAP/reference0.647640.013
39DAP/reference0.728730.078
41DAP/reference0.738310.018
42DAP/reference1.169720.006
43DAP/reference0.815390.037
47DAP/reference0.855720.001
52DAP/reference0.525930.013
57DAP/reference0.705960.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.807570.065
27DAP/17DAP1.089670.754
39DAP/27DAP0.746620.037
41DAP/39DAP1.143351
42DAP/41DAP1.059580.886
43DAP/42DAP0.920890.351
47DAP/43DAP0.932160.447
52DAP/47DAP0.605210.041
57DAP/52DAP0.838210.418
57DAP/7DAP0.302770.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.48780.024
17DAP/reference1.818620.006
27DAP/reference1.472070.007
39DAP/reference1.175210.053
41DAP/reference1.48260.013
42DAP/reference1.285650.076
43DAP/reference1.204160.083
47DAP/reference1.099740.595
52DAP/reference1.130710.599
57DAP/reference0.948210.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.433870.213
17DAP/reference1.791930.008
27DAP/reference1.593680.061
39DAP/reference0.896840.202
41DAP/reference1.334510.014
42DAP/reference1.722710.007
43DAP/reference0.886840.336
47DAP/reference1.174670.182
52DAP/reference0.656610.005
57DAP/reference0.673890.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.001990.015
17DAP/reference1.589040.14
27DAP/reference1.388830.026
39DAP/reference1.437850.011
41DAP/reference1.143990.052
42DAP/reference1.169250.184
43DAP/reference1.277150.209
47DAP/reference0.590870.006
52DAP/reference0.974510.663
57DAP/reference1.059690.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.084990.966
26DAP/20DAP1.546040.117
34DAP/26DAP0.854610.381
51DAP/34DAP0.811690.147
52DAP/51DAP0.965821
53DAP/52DAP0.939160.876
55DAP/53DAP1.065480.964
57DAP/55DAP1.188920.841
62DAP/57DAP0.982350.994
68DAP/62DAP1.078840.991
68DAP/14DAP0.820560.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.203710.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.853740.323
Mature Green Tomato/Ripe Tomato2.17538
Immature Eggplant/Mature Eggplant1.116590.348
Ripe Pepper/Ripe Tomato1.439961
Mature Eggplant/Ripe Tomato1.352210.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.958860.944
1-1-2/M821.333141
12-2/M821.16641
12-4/M820.967821
1-3/M821.217930.479
2-1-1/M820.935440.92
2-1/M821.130011
2-6/M821.168120.505
3-2/M821.014271
4-1-1/M821.129641
4-1/M821.017431
4-3-2/M821.693110.241
4-3/M821.514710.268
5-3/M821.190141
6-2/M821.1411
6-3/M820.983391
7-1/M821.07530.598
7-2/M821.081621
9-3-2/M821.29004

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.797860.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.013711
IL12-4/WTpooled0.765510.539
IL1-4/WTpooled1.09081
WT/WTpooled1.017251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.124151

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.98771
DC3000/delta hrp 6h1.174810.582
DC3000/delta hrp 12h1.311061
DC3000/delta hrp 24h1.114850.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.407590.042
DC3000 delta B/DC3000 delta AB1.416220.146

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.196551
Exp 36h1.194141
Exp 60h1.518940.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002411
Var 0h1.076550.339
Var 12h I row2-row10.943420.77
Var 12h NI row2-row11.071510.649
Var 36h I row2-row11.117620.742
Var 36h NI row2-row10.930670.61
Var 60h I row2-row10.826670.293
Var 60h NI row2-row10.860590.63
Time course 0hI-0hNI1.130310.377
Time course 12hI-12hNI1.02670.811
Time course 36hI-36hNI1.402910.011
Time course 60hI-60hNI1.758880.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.073780.798
transgenic ySAMdc/azygous control (breaker)1.229290.248
transgenic ySAMdc/azygous control (red)1.171250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.159440.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.73550.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.050330.096
Manapal/WT (break)0.998931
Manapal/WT (red)0.865380.199