Expression of 1-1-7.3.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.933490.627
27DAP/17DAP0.947680.923
39DAP/27DAP1.068260.956
41DAP/39DAP1.274340.715
42DAP/41DAP1.111621
43DAP/42DAP1.056271
47DAP/43DAP1.094940.633
52DAP/47DAP1.024670.983
57DAP/52DAP1.430020.648

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.087780.403
17DAP/reference1.089680.154
27DAP/reference1.034260.925
39DAP/reference1.022150.747
41DAP/reference0.96530.542
42DAP/reference0.853960.004
43DAP/reference1.043910.758
47DAP/reference0.860180.015
52DAP/reference0.945350.319
57DAP/reference0.973640.503

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.141520.205
27DAP/17DAP1.129120.554
39DAP/27DAP0.894850.673
41DAP/39DAP1.023650.896
42DAP/41DAP1.000560.91
43DAP/42DAP1.086120.446
47DAP/43DAP0.943510.75
52DAP/47DAP1.171850.603
57DAP/52DAP1.172940.358
57DAP/7DAP0.986831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122010.263
17DAP/reference1.168790.035
27DAP/reference1.152330.16
39DAP/reference1.122310.107
41DAP/reference1.143080.491
42DAP/reference1.058480.686
43DAP/reference1.068380.511
47DAP/reference1.007181
52DAP/reference0.972490.477
57DAP/reference0.993380.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868070.197
17DAP/reference0.850520.063
27DAP/reference0.86240.1
39DAP/reference0.866470.108
41DAP/reference0.838680.07
42DAP/reference0.883850.15
43DAP/reference0.709740.039
47DAP/reference0.864640.092
52DAP/reference0.879490.187
57DAP/reference0.854580.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.138120.212
17DAP/reference1.13290.595
27DAP/reference1.273910.096
39DAP/reference1.202170.078
41DAP/reference1.113540.383
42DAP/reference1.00071
43DAP/reference0.936630.246
47DAP/reference0.977660.494
52DAP/reference2.980460.318
57DAP/reference0.993910.623

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.183280.966
26DAP/20DAP0.806640.317
34DAP/26DAP1.054211
51DAP/34DAP1.411930.339
52DAP/51DAP0.897911
53DAP/52DAP0.891510.684
55DAP/53DAP1.372560.341
57DAP/55DAP0.999590.891
62DAP/57DAP1.098191
68DAP/62DAP1.651850.202
68DAP/14DAP1.579290.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.362230.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.758110.446
Immature Eggplant/Mature Eggplant0.76650.407
Ripe Pepper/Ripe Tomato1.51247
Mature Eggplant/Ripe Tomato1.304981

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.282580.551
1-1-2/M821.073990.977
12-2/M821.139831
12-4/M820.99159
1-3/M82N/AN/A
2-1-1/M821.614260.403
2-1/M821.4632
2-6/M821.24341
3-2/M820.991161
4-1-1/M821.00837
4-1/M821.51572
4-3-2/M821.37325
4-3/M821.772770.268
5-3/M820.964761
6-2/M820.94517
6-3/M821.022641
7-1/M820.938771
7-2/M821.344731
9-3-2/M821.077341

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.436120.277
IL2-6/WTpooled0.775030.348
IL7-5/WTpooled0.59785
IL7-3/WTpooled1.335551
IL12-4/WTpooled1.025411
IL1-4/WTpooled0.888330.422
WT/WTpooled1.060391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.956921

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.884710.493
DC3000/delta hrp 6h0.694320.95
DC3000/delta hrp 12h0.92022
DC3000/delta hrp 24h0.71870.077

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.210960.29
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.887171
Var 0h0.950181
Var 12h I row2-row10.96667
Var 12h NI row2-row10.540031
Var 36h I row2-row11.1360.291
Var 36h NI row2-row10.840570.45
Var 60h I row2-row10.941180.582
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI1.33710.799
Time course 12hI-12hNI0.942030.882
Time course 36hI-36hNI0.832890.352
Time course 60hI-60hNI1.433530.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.915520.362
transgenic ySAMdc/azygous control (breaker)1.366660.178
transgenic ySAMdc/azygous control (red)1.076980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.959820.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.994540.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.932551
Manapal/WT (break)0.968691
Manapal/WT (red)0.902490.274