Expression of 1-1-7.3.14.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93349 | 0.627 |
27DAP/17DAP | 0.94768 | 0.923 |
39DAP/27DAP | 1.06826 | 0.956 |
41DAP/39DAP | 1.27434 | 0.715 |
42DAP/41DAP | 1.11162 | 1 |
43DAP/42DAP | 1.05627 | 1 |
47DAP/43DAP | 1.09494 | 0.633 |
52DAP/47DAP | 1.02467 | 0.983 |
57DAP/52DAP | 1.43002 | 0.648 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08778 | 0.403 |
17DAP/reference | 1.08968 | 0.154 |
27DAP/reference | 1.03426 | 0.925 |
39DAP/reference | 1.02215 | 0.747 |
41DAP/reference | 0.9653 | 0.542 |
42DAP/reference | 0.85396 | 0.004 |
43DAP/reference | 1.04391 | 0.758 |
47DAP/reference | 0.86018 | 0.015 |
52DAP/reference | 0.94535 | 0.319 |
57DAP/reference | 0.97364 | 0.503 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14152 | 0.205 |
27DAP/17DAP | 1.12912 | 0.554 |
39DAP/27DAP | 0.89485 | 0.673 |
41DAP/39DAP | 1.02365 | 0.896 |
42DAP/41DAP | 1.00056 | 0.91 |
43DAP/42DAP | 1.08612 | 0.446 |
47DAP/43DAP | 0.94351 | 0.75 |
52DAP/47DAP | 1.17185 | 0.603 |
57DAP/52DAP | 1.17294 | 0.358 |
57DAP/7DAP | 0.98683 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12201 | 0.263 |
17DAP/reference | 1.16879 | 0.035 |
27DAP/reference | 1.15233 | 0.16 |
39DAP/reference | 1.12231 | 0.107 |
41DAP/reference | 1.14308 | 0.491 |
42DAP/reference | 1.05848 | 0.686 |
43DAP/reference | 1.06838 | 0.511 |
47DAP/reference | 1.00718 | 1 |
52DAP/reference | 0.97249 | 0.477 |
57DAP/reference | 0.99338 | 0.629 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86807 | 0.197 |
17DAP/reference | 0.85052 | 0.063 |
27DAP/reference | 0.8624 | 0.1 |
39DAP/reference | 0.86647 | 0.108 |
41DAP/reference | 0.83868 | 0.07 |
42DAP/reference | 0.88385 | 0.15 |
43DAP/reference | 0.70974 | 0.039 |
47DAP/reference | 0.86464 | 0.092 |
52DAP/reference | 0.87949 | 0.187 |
57DAP/reference | 0.85458 | 0.156 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13812 | 0.212 |
17DAP/reference | 1.1329 | 0.595 |
27DAP/reference | 1.27391 | 0.096 |
39DAP/reference | 1.20217 | 0.078 |
41DAP/reference | 1.11354 | 0.383 |
42DAP/reference | 1.0007 | 1 |
43DAP/reference | 0.93663 | 0.246 |
47DAP/reference | 0.97766 | 0.494 |
52DAP/reference | 2.98046 | 0.318 |
57DAP/reference | 0.99391 | 0.623 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18328 | 0.966 |
26DAP/20DAP | 0.80664 | 0.317 |
34DAP/26DAP | 1.05421 | 1 |
51DAP/34DAP | 1.41193 | 0.339 |
52DAP/51DAP | 0.89791 | 1 |
53DAP/52DAP | 0.89151 | 0.684 |
55DAP/53DAP | 1.37256 | 0.341 |
57DAP/55DAP | 0.99959 | 0.891 |
62DAP/57DAP | 1.09819 | 1 |
68DAP/62DAP | 1.65185 | 0.202 |
68DAP/14DAP | 1.57929 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.36223 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.75811 | 0.446 |
Immature Eggplant/Mature Eggplant | 0.7665 | 0.407 |
Ripe Pepper/Ripe Tomato | 1.51247 | |
Mature Eggplant/Ripe Tomato | 1.30498 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.28258 | 0.551 |
1-1-2/M82 | 1.07399 | 0.977 |
12-2/M82 | 1.13983 | 1 |
12-4/M82 | 0.99159 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.61426 | 0.403 |
2-1/M82 | 1.4632 | |
2-6/M82 | 1.24341 | |
3-2/M82 | 0.99116 | 1 |
4-1-1/M82 | 1.00837 | |
4-1/M82 | 1.51572 | |
4-3-2/M82 | 1.37325 | |
4-3/M82 | 1.77277 | 0.268 |
5-3/M82 | 0.96476 | 1 |
6-2/M82 | 0.94517 | |
6-3/M82 | 1.02264 | 1 |
7-1/M82 | 0.93877 | 1 |
7-2/M82 | 1.34473 | 1 |
9-3-2/M82 | 1.07734 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.43612 | 0.277 |
IL2-6/WTpooled | 0.77503 | 0.348 |
IL7-5/WTpooled | 0.59785 | |
IL7-3/WTpooled | 1.33555 | 1 |
IL12-4/WTpooled | 1.02541 | 1 |
IL1-4/WTpooled | 0.88833 | 0.422 |
WT/WTpooled | 1.06039 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95692 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88471 | 0.493 |
DC3000/delta hrp 6h | 0.69432 | 0.95 |
DC3000/delta hrp 12h | 0.92022 | |
DC3000/delta hrp 24h | 0.7187 | 0.077 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21096 | 0.29 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.88717 | 1 |
Var 0h | 0.95018 | 1 |
Var 12h I row2-row1 | 0.96667 | |
Var 12h NI row2-row1 | 0.54003 | 1 |
Var 36h I row2-row1 | 1.136 | 0.291 |
Var 36h NI row2-row1 | 0.84057 | 0.45 |
Var 60h I row2-row1 | 0.94118 | 0.582 |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 1.3371 | 0.799 |
Time course 12hI-12hNI | 0.94203 | 0.882 |
Time course 36hI-36hNI | 0.83289 | 0.352 |
Time course 60hI-60hNI | 1.43353 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91552 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.36666 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.07698 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95982 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99454 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93255 | 1 |
Manapal/WT (break) | 0.96869 | 1 |
Manapal/WT (red) | 0.90249 | 0.274 |
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