Expression of 1-1-7.3.15.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17221 | 0.534 |
27DAP/17DAP | 1.30676 | 0.688 |
39DAP/27DAP | 1.01732 | 0.749 |
41DAP/39DAP | 1.31953 | 0.488 |
42DAP/41DAP | 1.02965 | 1 |
43DAP/42DAP | 1.06933 | 1 |
47DAP/43DAP | 1.2099 | 0.538 |
52DAP/47DAP | 1.20652 | 0.906 |
57DAP/52DAP | 1.03762 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94212 | 0.238 |
17DAP/reference | 1.06011 | 0.066 |
27DAP/reference | 1.04986 | 0.478 |
39DAP/reference | 0.99784 | 0.991 |
41DAP/reference | 0.95571 | 0.542 |
42DAP/reference | 0.88697 | 0.021 |
43DAP/reference | 0.9247 | 0.148 |
47DAP/reference | 0.91424 | 0.015 |
52DAP/reference | 0.90475 | 0.215 |
57DAP/reference | 0.90559 | 0.262 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16788 | 1 |
27DAP/17DAP | 1.35627 | 0.271 |
39DAP/27DAP | 1.03603 | 0.728 |
41DAP/39DAP | 0.91258 | 0.861 |
42DAP/41DAP | 0.96054 | 0.734 |
43DAP/42DAP | 1.12193 | 0.585 |
47DAP/43DAP | 1.39522 | 0.234 |
52DAP/47DAP | 0.95013 | 0.839 |
57DAP/52DAP | 1.26059 | 0.23 |
57DAP/7DAP | 1.20052 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03903 | 0.761 |
17DAP/reference | 0.85791 | 0.031 |
27DAP/reference | 0.88653 | 0.135 |
39DAP/reference | 0.92669 | 0.23 |
41DAP/reference | 0.83332 | 0.073 |
42DAP/reference | 0.95393 | 0.415 |
43DAP/reference | 0.73418 | 0.015 |
47DAP/reference | 1.03752 | 0.868 |
52DAP/reference | 1.03952 | 0.832 |
57DAP/reference | 0.98759 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12625 | 0.265 |
17DAP/reference | 0.9436 | 0.307 |
27DAP/reference | 0.84783 | 0.111 |
39DAP/reference | 0.86804 | 0.159 |
41DAP/reference | 0.85983 | 0.068 |
42DAP/reference | 0.77785 | 0.035 |
43DAP/reference | 0.91273 | 0.224 |
47DAP/reference | 0.97328 | 0.379 |
52DAP/reference | 1.00262 | 0.761 |
57DAP/reference | 1.02382 | 0.609 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84094 | 0.047 |
17DAP/reference | 0.97897 | 0.668 |
27DAP/reference | 0.94285 | 0.357 |
39DAP/reference | 0.92828 | 0.246 |
41DAP/reference | 1.00235 | 0.682 |
42DAP/reference | 0.99584 | 0.816 |
43DAP/reference | 0.90729 | 0.256 |
47DAP/reference | 1.05982 | 0.424 |
52DAP/reference | 1.19902 | 0.542 |
57DAP/reference | 0.7058 | 0.058 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12004 | 0.966 |
26DAP/20DAP | 1.38497 | 0.562 |
34DAP/26DAP | 1.03226 | 1 |
51DAP/34DAP | 0.89078 | 0.779 |
52DAP/51DAP | 0.86639 | 1 |
53DAP/52DAP | 1.10069 | 0.944 |
55DAP/53DAP | 1.37461 | 0.519 |
57DAP/55DAP | 1.11159 | 0.348 |
62DAP/57DAP | 0.95535 | 0.994 |
68DAP/62DAP | 1.12407 | 0.866 |
68DAP/14DAP | 0.69311 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.44835 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.87268 | 0.377 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.44938 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.79231 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04721 | 1 |
1-1-2/M82 | 1.27682 | |
12-2/M82 | 1.06501 | 1 |
12-4/M82 | 1.0294 | 1 |
1-3/M82 | 0.62263 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11551 | 0.594 |
3-2/M82 | 0.83852 | |
4-1-1/M82 | 0.92156 | 1 |
4-1/M82 | 0.95696 | |
4-3-2/M82 | 1.03992 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.83663 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.87353 | 1 |
7-1/M82 | 0.73956 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.25551 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.26279 | |
IL2-6/WTpooled | 1.14423 | |
IL7-5/WTpooled | 0.61061 | |
IL7-3/WTpooled | 1.11183 | 0.362 |
IL12-4/WTpooled | 1.10743 | 0.785 |
IL1-4/WTpooled | 0.94618 | 0.699 |
WT/WTpooled | 1.17237 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87895 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14489 | 0.914 |
DC3000/delta hrp 6h | 0.8875 | 0.95 |
DC3000/delta hrp 12h | 1.14216 | 1 |
DC3000/delta hrp 24h | 0.92271 | 0.725 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87781 | 1 |
Exp 36h | 1.08288 | 0.693 |
Exp 60h | 1.03772 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10017 | 1 |
Var 0h | 1.08896 | 0.782 |
Var 12h I row2-row1 | 0.95951 | 1 |
Var 12h NI row2-row1 | 0.7761 | 1 |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.9009 | 0.791 |
Var 60h I row2-row1 | 1.15556 | 1 |
Var 60h NI row2-row1 | 1.05035 | 0.904 |
Time course 0hI-0hNI | 1.08449 | 0.833 |
Time course 12hI-12hNI | 0.96046 | 0.747 |
Time course 36hI-36hNI | 0.96523 | 0.433 |
Time course 60hI-60hNI | 2.14049 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90227 | 0.306 |
transgenic ySAMdc/azygous control (breaker) | 0.9769 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97539 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99072 | 0.588 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06283 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06602 | 1 |
Manapal/WT (break) | 0.7053 | 0.236 |
Manapal/WT (red) | 1.08142 | 1 |
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