Expression of 1-1-7.3.15.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.172210.534
27DAP/17DAP1.306760.688
39DAP/27DAP1.017320.749
41DAP/39DAP1.319530.488
42DAP/41DAP1.029651
43DAP/42DAP1.069331
47DAP/43DAP1.20990.538
52DAP/47DAP1.206520.906
57DAP/52DAP1.037621

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.942120.238
17DAP/reference1.060110.066
27DAP/reference1.049860.478
39DAP/reference0.997840.991
41DAP/reference0.955710.542
42DAP/reference0.886970.021
43DAP/reference0.92470.148
47DAP/reference0.914240.015
52DAP/reference0.904750.215
57DAP/reference0.905590.262

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.167881
27DAP/17DAP1.356270.271
39DAP/27DAP1.036030.728
41DAP/39DAP0.912580.861
42DAP/41DAP0.960540.734
43DAP/42DAP1.121930.585
47DAP/43DAP1.395220.234
52DAP/47DAP0.950130.839
57DAP/52DAP1.260590.23
57DAP/7DAP1.200521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.039030.761
17DAP/reference0.857910.031
27DAP/reference0.886530.135
39DAP/reference0.926690.23
41DAP/reference0.833320.073
42DAP/reference0.953930.415
43DAP/reference0.734180.015
47DAP/reference1.037520.868
52DAP/reference1.039520.832
57DAP/reference0.987590.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.126250.265
17DAP/reference0.94360.307
27DAP/reference0.847830.111
39DAP/reference0.868040.159
41DAP/reference0.859830.068
42DAP/reference0.777850.035
43DAP/reference0.912730.224
47DAP/reference0.973280.379
52DAP/reference1.002620.761
57DAP/reference1.023820.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.840940.047
17DAP/reference0.978970.668
27DAP/reference0.942850.357
39DAP/reference0.928280.246
41DAP/reference1.002350.682
42DAP/reference0.995840.816
43DAP/reference0.907290.256
47DAP/reference1.059820.424
52DAP/reference1.199020.542
57DAP/reference0.70580.058

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.120040.966
26DAP/20DAP1.384970.562
34DAP/26DAP1.032261
51DAP/34DAP0.890780.779
52DAP/51DAP0.866391
53DAP/52DAP1.100690.944
55DAP/53DAP1.374610.519
57DAP/55DAP1.111590.348
62DAP/57DAP0.955350.994
68DAP/62DAP1.124070.866
68DAP/14DAP0.693110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.448350.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.872680.377
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.449380.224
Mature Eggplant/Ripe Tomato0.79231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.047211
1-1-2/M821.27682
12-2/M821.065011
12-4/M821.02941
1-3/M820.62263
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.115510.594
3-2/M820.83852
4-1-1/M820.921561
4-1/M820.95696
4-3-2/M821.039920.508
4-3/M82N/AN/A
5-3/M820.836631
6-2/M82N/AN/A
6-3/M820.873531
7-1/M820.73956
7-2/M82N/AN/A
9-3-2/M821.25551

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.26279
IL2-6/WTpooled1.14423
IL7-5/WTpooled0.61061
IL7-3/WTpooled1.111830.362
IL12-4/WTpooled1.107430.785
IL1-4/WTpooled0.946180.699
WT/WTpooled1.172371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.87895

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.144890.914
DC3000/delta hrp 6h0.88750.95
DC3000/delta hrp 12h1.142161
DC3000/delta hrp 24h0.922710.725

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.877811
Exp 36h1.082880.693
Exp 60h1.037721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.100171
Var 0h1.088960.782
Var 12h I row2-row10.959511
Var 12h NI row2-row10.77611
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.90090.791
Var 60h I row2-row11.155561
Var 60h NI row2-row11.050350.904
Time course 0hI-0hNI1.084490.833
Time course 12hI-12hNI0.960460.747
Time course 36hI-36hNI0.965230.433
Time course 60hI-60hNI2.140490.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.902270.306
transgenic ySAMdc/azygous control (breaker)0.97691
transgenic ySAMdc/azygous control (red)0.975391

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990720.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.062831

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.066021
Manapal/WT (break)0.70530.236
Manapal/WT (red)1.081421