Expression of 1-1-7.3.15.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17316 | 0.477 |
27DAP/17DAP | 1.12886 | 0.845 |
39DAP/27DAP | 0.93603 | 0.652 |
41DAP/39DAP | 1.26191 | 0.282 |
42DAP/41DAP | 1.12884 | 0.899 |
43DAP/42DAP | 1.00843 | 0.945 |
47DAP/43DAP | 1.26801 | 0.309 |
52DAP/47DAP | 0.94261 | 0.818 |
57DAP/52DAP | 1.00823 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00331 | 0.771 |
17DAP/reference | 1.03952 | 0.294 |
27DAP/reference | 1.05011 | 0.232 |
39DAP/reference | 1.04078 | 0.335 |
41DAP/reference | 1.00274 | 1 |
42DAP/reference | 0.89574 | 0.015 |
43DAP/reference | 0.97572 | 0.708 |
47DAP/reference | 0.95894 | 0.161 |
52DAP/reference | 1.00184 | 0.618 |
57DAP/reference | 0.95449 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98966 | 0.782 |
27DAP/17DAP | 0.99063 | 0.919 |
39DAP/27DAP | 1.03005 | 0.615 |
41DAP/39DAP | 1.0528 | 0.807 |
42DAP/41DAP | 0.94894 | 0.548 |
43DAP/42DAP | 1.02574 | 0.297 |
47DAP/43DAP | 1.01159 | 0.939 |
52DAP/47DAP | 1.00346 | 1 |
57DAP/52DAP | 1.02109 | 0.911 |
57DAP/7DAP | 1.0817 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93721 | 0.095 |
17DAP/reference | 0.94876 | 0.22 |
27DAP/reference | 1.01001 | 1 |
39DAP/reference | 0.95801 | 0.095 |
41DAP/reference | 0.97869 | 0.449 |
42DAP/reference | 1.00106 | 0.828 |
43DAP/reference | 0.96405 | 0.368 |
47DAP/reference | 0.88237 | 0.101 |
52DAP/reference | 0.91729 | 0.126 |
57DAP/reference | 0.93923 | 0.128 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97935 | 0.72 |
17DAP/reference | 0.94546 | 0.182 |
27DAP/reference | 0.97186 | 0.519 |
39DAP/reference | 0.91472 | 0.159 |
41DAP/reference | 0.83847 | 0.096 |
42DAP/reference | 0.90819 | 0.261 |
43DAP/reference | 0.94907 | 0.43 |
47DAP/reference | 0.869 | 0.164 |
52DAP/reference | 0.99036 | 0.576 |
57DAP/reference | 1.00702 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00623 | 1 |
17DAP/reference | 0.95202 | 0.477 |
27DAP/reference | 1.06274 | 0.357 |
39DAP/reference | 1.03793 | 0.235 |
41DAP/reference | 0.89795 | 0.148 |
42DAP/reference | 0.79905 | 0.041 |
43DAP/reference | 0.8064 | 0.047 |
47DAP/reference | 0.95018 | 0.383 |
52DAP/reference | 0.93487 | 0.289 |
57DAP/reference | 0.68691 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96055 | 1 |
26DAP/20DAP | 0.9376 | 0.512 |
34DAP/26DAP | 0.93514 | 0.596 |
51DAP/34DAP | 1.03556 | 0.814 |
52DAP/51DAP | 1.04806 | 0.626 |
53DAP/52DAP | 0.95787 | 0.807 |
55DAP/53DAP | 0.91812 | 0.43 |
57DAP/55DAP | 1.12424 | 0.745 |
62DAP/57DAP | 1.19232 | 0.35 |
68DAP/62DAP | 0.91537 | 0.668 |
68DAP/14DAP | 0.9987 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0056 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.38983 | |
Mature Green Tomato/Ripe Tomato | 0.79056 | 0.096 |
Immature Eggplant/Mature Eggplant | 1.05918 | |
Ripe Pepper/Ripe Tomato | 0.49424 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.45302 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07821 | 0.877 |
1-1-2/M82 | 1.00264 | 1 |
12-2/M82 | 0.98543 | 1 |
12-4/M82 | 1.00477 | 1 |
1-3/M82 | 1.02473 | 1 |
2-1-1/M82 | 1.0175 | 1 |
2-1/M82 | 1.31853 | 1 |
2-6/M82 | 0.98038 | 1 |
3-2/M82 | 0.99404 | 1 |
4-1-1/M82 | 0.9765 | 1 |
4-1/M82 | 1.03397 | 1 |
4-3-2/M82 | 0.96518 | 1 |
4-3/M82 | 0.98793 | 1 |
5-3/M82 | 1.02372 | 1 |
6-2/M82 | 1.0199 | 1 |
6-3/M82 | 1.00691 | 1 |
7-1/M82 | 0.90277 | 0.466 |
7-2/M82 | 1.0449 | 1 |
9-3-2/M82 | 0.90421 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.64726 | 0.243 |
IL2-6/WTpooled | 1.24582 | 0.419 |
IL7-5/WTpooled | 0.78069 | 1 |
IL7-3/WTpooled | 0.97052 | 1 |
IL12-4/WTpooled | 1.05138 | 0.532 |
IL1-4/WTpooled | 0.839 | 0.834 |
WT/WTpooled | 1.01321 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94123 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9442 | 1 |
DC3000/delta hrp 6h | 1.11252 | 1 |
DC3000/delta hrp 12h | 0.82395 | 1 |
DC3000/delta hrp 24h | 0.99929 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06791 | 0.441 |
DC3000 delta B/DC3000 delta AB | 0.96761 | 0.71 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.19877 | 1 |
Exp 36h | 1.07472 | 1 |
Exp 60h | 0.97172 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01241 | 1 |
Var 0h | 0.9139 | 0.933 |
Var 12h I row2-row1 | 1.0917 | 0.379 |
Var 12h NI row2-row1 | 1.01913 | 1 |
Var 36h I row2-row1 | 0.98549 | 1 |
Var 36h NI row2-row1 | 0.91296 | 0.549 |
Var 60h I row2-row1 | 1.16118 | 0.562 |
Var 60h NI row2-row1 | 1.16718 | 0.904 |
Time course 0hI-0hNI | 1.08151 | 0.833 |
Time course 12hI-12hNI | 1.00184 | 1 |
Time course 36hI-36hNI | 0.9419 | 0.156 |
Time course 60hI-60hNI | 1.02056 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97143 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 0.93679 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.90123 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00902 | 0.495 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05641 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98993 | 1 |
Manapal/WT (break) | 0.74852 | 0.299 |
Manapal/WT (red) | 0.64205 | 0.181 |
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