Expression of 1-1-7.3.15.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.173160.477
27DAP/17DAP1.128860.845
39DAP/27DAP0.936030.652
41DAP/39DAP1.261910.282
42DAP/41DAP1.128840.899
43DAP/42DAP1.008430.945
47DAP/43DAP1.268010.309
52DAP/47DAP0.942610.818
57DAP/52DAP1.008231

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.003310.771
17DAP/reference1.039520.294
27DAP/reference1.050110.232
39DAP/reference1.040780.335
41DAP/reference1.002741
42DAP/reference0.895740.015
43DAP/reference0.975720.708
47DAP/reference0.958940.161
52DAP/reference1.001840.618
57DAP/reference0.954490.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989660.782
27DAP/17DAP0.990630.919
39DAP/27DAP1.030050.615
41DAP/39DAP1.05280.807
42DAP/41DAP0.948940.548
43DAP/42DAP1.025740.297
47DAP/43DAP1.011590.939
52DAP/47DAP1.003461
57DAP/52DAP1.021090.911
57DAP/7DAP1.08170.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937210.095
17DAP/reference0.948760.22
27DAP/reference1.010011
39DAP/reference0.958010.095
41DAP/reference0.978690.449
42DAP/reference1.001060.828
43DAP/reference0.964050.368
47DAP/reference0.882370.101
52DAP/reference0.917290.126
57DAP/reference0.939230.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979350.72
17DAP/reference0.945460.182
27DAP/reference0.971860.519
39DAP/reference0.914720.159
41DAP/reference0.838470.096
42DAP/reference0.908190.261
43DAP/reference0.949070.43
47DAP/reference0.8690.164
52DAP/reference0.990360.576
57DAP/reference1.007021

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006231
17DAP/reference0.952020.477
27DAP/reference1.062740.357
39DAP/reference1.037930.235
41DAP/reference0.897950.148
42DAP/reference0.799050.041
43DAP/reference0.80640.047
47DAP/reference0.950180.383
52DAP/reference0.934870.289
57DAP/reference0.686910.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.960551
26DAP/20DAP0.93760.512
34DAP/26DAP0.935140.596
51DAP/34DAP1.035560.814
52DAP/51DAP1.048060.626
53DAP/52DAP0.957870.807
55DAP/53DAP0.918120.43
57DAP/55DAP1.124240.745
62DAP/57DAP1.192320.35
68DAP/62DAP0.915370.668
68DAP/14DAP0.99871

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.00561

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.38983
Mature Green Tomato/Ripe Tomato0.790560.096
Immature Eggplant/Mature Eggplant1.05918
Ripe Pepper/Ripe Tomato0.494240.224
Mature Eggplant/Ripe Tomato0.453021

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.078210.877
1-1-2/M821.002641
12-2/M820.985431
12-4/M821.004771
1-3/M821.024731
2-1-1/M821.01751
2-1/M821.318531
2-6/M820.980381
3-2/M820.994041
4-1-1/M820.97651
4-1/M821.033971
4-3-2/M820.965181
4-3/M820.987931
5-3/M821.023721
6-2/M821.01991
6-3/M821.006911
7-1/M820.902770.466
7-2/M821.04491
9-3-2/M820.904210.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.647260.243
IL2-6/WTpooled1.245820.419
IL7-5/WTpooled0.780691
IL7-3/WTpooled0.970521
IL12-4/WTpooled1.051380.532
IL1-4/WTpooled0.8390.834
WT/WTpooled1.013211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.941230.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94421
DC3000/delta hrp 6h1.112521
DC3000/delta hrp 12h0.823951
DC3000/delta hrp 24h0.999291

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.067910.441
DC3000 delta B/DC3000 delta AB0.967610.71

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.198771
Exp 36h1.074721
Exp 60h0.971720.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012411
Var 0h0.91390.933
Var 12h I row2-row11.09170.379
Var 12h NI row2-row11.019131
Var 36h I row2-row10.985491
Var 36h NI row2-row10.912960.549
Var 60h I row2-row11.161180.562
Var 60h NI row2-row11.167180.904
Time course 0hI-0hNI1.081510.833
Time course 12hI-12hNI1.001841
Time course 36hI-36hNI0.94190.156
Time course 60hI-60hNI1.020560.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.971430.33
transgenic ySAMdc/azygous control (breaker)0.936790.49
transgenic ySAMdc/azygous control (red)0.901231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009020.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.056411

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.989931
Manapal/WT (break)0.748520.299
Manapal/WT (red)0.642050.181