Expression of 1-1-7.3.15.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21025 | 0.656 |
27DAP/17DAP | 1.07735 | 0.967 |
39DAP/27DAP | 0.6638 | 0.286 |
41DAP/39DAP | 1.0979 | 0.871 |
42DAP/41DAP | 1.09082 | 0.949 |
43DAP/42DAP | 1.26191 | 0.873 |
47DAP/43DAP | 1.42253 | 0.746 |
52DAP/47DAP | 1.06905 | 0.989 |
57DAP/52DAP | 0.96557 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23873 | 0.03 |
17DAP/reference | 1.03633 | 0.696 |
27DAP/reference | 1.08564 | 0.258 |
39DAP/reference | 1.00867 | 1 |
41DAP/reference | 0.96871 | 0.542 |
42DAP/reference | 0.90722 | 0.129 |
43DAP/reference | 1.06714 | 0.269 |
47DAP/reference | 0.90442 | 0.077 |
52DAP/reference | 1.1744 | 0.205 |
57DAP/reference | 1.0159 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17426 | 0.129 |
27DAP/17DAP | 0.93874 | 0.58 |
39DAP/27DAP | 0.92108 | 0.371 |
41DAP/39DAP | 1.10134 | 0.355 |
42DAP/41DAP | 1.03874 | 1 |
43DAP/42DAP | 0.91468 | 0.367 |
47DAP/43DAP | 0.90997 | 0.617 |
52DAP/47DAP | 1.43605 | 0.148 |
57DAP/52DAP | 1.30948 | 0.168 |
57DAP/7DAP | 0.81593 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11917 | 0.481 |
17DAP/reference | 1.37065 | 0.008 |
27DAP/reference | 1.40112 | 0.01 |
39DAP/reference | 1.00396 | |
41DAP/reference | 1.05441 | 0.864 |
42DAP/reference | 1.14044 | 0.889 |
43DAP/reference | 1.10003 | 0.457 |
47DAP/reference | 0.86171 | 0.168 |
52DAP/reference | 1.23934 | |
57DAP/reference | 1.31562 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87654 | 0.096 |
17DAP/reference | 0.94308 | 0.389 |
27DAP/reference | 0.9963 | 0.686 |
39DAP/reference | 0.90161 | 0.208 |
41DAP/reference | 1.07511 | 0.781 |
42DAP/reference | 0.92806 | 0.212 |
43DAP/reference | 0.78336 | 0.054 |
47DAP/reference | 0.78742 | 0.022 |
52DAP/reference | 0.84536 | 0.034 |
57DAP/reference | 0.69291 | 0.009 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06634 | 0.846 |
17DAP/reference | 1.10209 | 0.482 |
27DAP/reference | 1.14535 | 0.357 |
39DAP/reference | 1.2084 | 0.169 |
41DAP/reference | 1.23975 | 0.265 |
42DAP/reference | 1.11108 | 0.54 |
43DAP/reference | 1.16919 | 0.246 |
47DAP/reference | 1.03514 | 1 |
52DAP/reference | 1.16949 | 0.592 |
57DAP/reference | 0.96814 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.64823 | |
26DAP/20DAP | 1.52767 | 0.744 |
34DAP/26DAP | 1.8947 | 0.819 |
51DAP/34DAP | 1.24163 | 0.936 |
52DAP/51DAP | 1.64923 | 0.367 |
53DAP/52DAP | 0.86156 | 0.217 |
55DAP/53DAP | 1.13485 | 0.534 |
57DAP/55DAP | 0.57066 | 0.039 |
62DAP/57DAP | 1.2568 | 0.047 |
68DAP/62DAP | 2.05167 | 0.331 |
68DAP/14DAP | 1.08419 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.52578 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.22 | 0.814 |
Immature Eggplant/Mature Eggplant | 1.27215 | 0.051 |
Ripe Pepper/Ripe Tomato | 0.63562 | 1 |
Mature Eggplant/Ripe Tomato | 0.89282 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.78807 | 1 |
12-2/M82 | 0.99209 | |
12-4/M82 | 1.12172 | 0.694 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.96185 | |
4-1-1/M82 | 1.16195 | |
4-1/M82 | 1.1047 | |
4-3-2/M82 | 1.14016 | |
4-3/M82 | 0.79899 | 0.72 |
5-3/M82 | 1.14573 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.6809 | |
7-1/M82 | 1.23044 | |
7-2/M82 | 0.91236 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.11169 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10291 | 1 |
IL12-4/WTpooled | 0.96754 | 1 |
IL1-4/WTpooled | 1.10835 | 1 |
WT/WTpooled | 0.91921 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94793 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06373 | 0.914 |
DC3000/delta hrp 6h | 1.45539 | 1 |
DC3000/delta hrp 12h | 0.98919 | 1 |
DC3000/delta hrp 24h | 0.90639 | 0.808 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9492 | 0.485 |
DC3000 delta B/DC3000 delta AB | 1.06444 | 0.665 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84748 | 0.213 |
Exp 36h | N/A | N/A |
Exp 60h | 0.9662 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01624 | 1 |
Var 0h | 1.11622 | 0.936 |
Var 12h I row2-row1 | 0.87007 | 0.565 |
Var 12h NI row2-row1 | 1.05115 | 1 |
Var 36h I row2-row1 | 0.91273 | 0.805 |
Var 36h NI row2-row1 | 1.16643 | 0.482 |
Var 60h I row2-row1 | 1.00763 | 1 |
Var 60h NI row2-row1 | 0.90164 | 1 |
Time course 0hI-0hNI | 0.94079 | 0.478 |
Time course 12hI-12hNI | 0.94957 | 0.546 |
Time course 36hI-36hNI | 0.92969 | 0.194 |
Time course 60hI-60hNI | 0.81026 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03245 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 0.73597 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.98302 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95621 | 0.172 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09702 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9664 | 1 |
Manapal/WT (break) | 1.04332 | 1 |
Manapal/WT (red) | 0.75982 | 0.216 |
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