Expression of 1-1-7.3.15.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.210250.656
27DAP/17DAP1.077350.967
39DAP/27DAP0.66380.286
41DAP/39DAP1.09790.871
42DAP/41DAP1.090820.949
43DAP/42DAP1.261910.873
47DAP/43DAP1.422530.746
52DAP/47DAP1.069050.989
57DAP/52DAP0.965570.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.238730.03
17DAP/reference1.036330.696
27DAP/reference1.085640.258
39DAP/reference1.008671
41DAP/reference0.968710.542
42DAP/reference0.907220.129
43DAP/reference1.067140.269
47DAP/reference0.904420.077
52DAP/reference1.17440.205
57DAP/reference1.01591

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.174260.129
27DAP/17DAP0.938740.58
39DAP/27DAP0.921080.371
41DAP/39DAP1.101340.355
42DAP/41DAP1.038741
43DAP/42DAP0.914680.367
47DAP/43DAP0.909970.617
52DAP/47DAP1.436050.148
57DAP/52DAP1.309480.168
57DAP/7DAP0.815931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119170.481
17DAP/reference1.370650.008
27DAP/reference1.401120.01
39DAP/reference1.00396
41DAP/reference1.054410.864
42DAP/reference1.140440.889
43DAP/reference1.100030.457
47DAP/reference0.861710.168
52DAP/reference1.23934
57DAP/reference1.315620.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876540.096
17DAP/reference0.943080.389
27DAP/reference0.99630.686
39DAP/reference0.901610.208
41DAP/reference1.075110.781
42DAP/reference0.928060.212
43DAP/reference0.783360.054
47DAP/reference0.787420.022
52DAP/reference0.845360.034
57DAP/reference0.692910.009

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066340.846
17DAP/reference1.102090.482
27DAP/reference1.145350.357
39DAP/reference1.20840.169
41DAP/reference1.239750.265
42DAP/reference1.111080.54
43DAP/reference1.169190.246
47DAP/reference1.035141
52DAP/reference1.169490.592
57DAP/reference0.968140.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.64823
26DAP/20DAP1.527670.744
34DAP/26DAP1.89470.819
51DAP/34DAP1.241630.936
52DAP/51DAP1.649230.367
53DAP/52DAP0.861560.217
55DAP/53DAP1.134850.534
57DAP/55DAP0.570660.039
62DAP/57DAP1.25680.047
68DAP/62DAP2.051670.331
68DAP/14DAP1.084191

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.525780.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.220.814
Immature Eggplant/Mature Eggplant1.272150.051
Ripe Pepper/Ripe Tomato0.635621
Mature Eggplant/Ripe Tomato0.89282

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.788071
12-2/M820.99209
12-4/M821.121720.694
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.96185
4-1-1/M821.16195
4-1/M821.1047
4-3-2/M821.14016
4-3/M820.798990.72
5-3/M821.14573
6-2/M82N/AN/A
6-3/M820.6809
7-1/M821.23044
7-2/M820.91236
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.111690.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.102911
IL12-4/WTpooled0.967541
IL1-4/WTpooled1.108351
WT/WTpooled0.919211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.947930.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.063730.914
DC3000/delta hrp 6h1.455391
DC3000/delta hrp 12h0.989191
DC3000/delta hrp 24h0.906390.808

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.94920.485
DC3000 delta B/DC3000 delta AB1.064440.665

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.847480.213
Exp 36hN/AN/A
Exp 60h0.96620.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016241
Var 0h1.116220.936
Var 12h I row2-row10.870070.565
Var 12h NI row2-row11.051151
Var 36h I row2-row10.912730.805
Var 36h NI row2-row11.166430.482
Var 60h I row2-row11.007631
Var 60h NI row2-row10.901641
Time course 0hI-0hNI0.940790.478
Time course 12hI-12hNI0.949570.546
Time course 36hI-36hNI0.929690.194
Time course 60hI-60hNI0.810260.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.032450.571
transgenic ySAMdc/azygous control (breaker)0.735970.131
transgenic ySAMdc/azygous control (red)0.983021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956210.172

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.097021

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.96641
Manapal/WT (break)1.043321
Manapal/WT (red)0.759820.216