Expression of 1-1-7.3.16.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01281 | 1 |
27DAP/17DAP | 0.98102 | 0.967 |
39DAP/27DAP | 1.12004 | 0.858 |
41DAP/39DAP | 1.14677 | 0.685 |
42DAP/41DAP | 1.12958 | 0.945 |
43DAP/42DAP | 0.9964 | 0.937 |
47DAP/43DAP | 1.05309 | 0.884 |
52DAP/47DAP | 1.41893 | 0.43 |
57DAP/52DAP | 0.89969 | 0.852 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10619 | 0.105 |
17DAP/reference | 1.06226 | 0.059 |
27DAP/reference | 0.98086 | 0.623 |
39DAP/reference | 1.01238 | 0.639 |
41DAP/reference | 1.0138 | 1 |
42DAP/reference | 1.02122 | 0.869 |
43DAP/reference | 1.03358 | 0.471 |
47DAP/reference | 1.02046 | 0.773 |
52DAP/reference | 1.00037 | 0.73 |
57DAP/reference | 0.9992 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00854 | 1 |
27DAP/17DAP | 1.07143 | 0.848 |
39DAP/27DAP | 1.02534 | 0.663 |
41DAP/39DAP | 1.0629 | 0.682 |
42DAP/41DAP | 1.03832 | 0.74 |
43DAP/42DAP | 1.00993 | 0.627 |
47DAP/43DAP | 1.02508 | 0.724 |
52DAP/47DAP | 0.98069 | 0.905 |
57DAP/52DAP | 0.98688 | 0.745 |
57DAP/7DAP | 0.89259 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87979 | 0.095 |
17DAP/reference | 0.92156 | 0.056 |
27DAP/reference | 0.98293 | 0.53 |
39DAP/reference | 0.87367 | 0.021 |
41DAP/reference | 0.96173 | 0.223 |
42DAP/reference | 0.92543 | 0.077 |
43DAP/reference | 0.86912 | 0.013 |
47DAP/reference | 0.95498 | 0.168 |
52DAP/reference | 0.89243 | 0.03 |
57DAP/reference | 0.87177 | 0.105 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97744 | 0.655 |
17DAP/reference | 0.98483 | 0.594 |
27DAP/reference | 1.03918 | 0.86 |
39DAP/reference | 1.02947 | 0.912 |
41DAP/reference | 0.95704 | 0.148 |
42DAP/reference | 0.97829 | 0.534 |
43DAP/reference | 0.9841 | 0.657 |
47DAP/reference | 0.95335 | 0.194 |
52DAP/reference | 0.9795 | 0.38 |
57DAP/reference | 0.94776 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96291 | 0.127 |
17DAP/reference | 0.961 | 0.358 |
27DAP/reference | 0.98258 | 0.594 |
39DAP/reference | 0.88082 | 0.04 |
41DAP/reference | 0.91088 | 0.077 |
42DAP/reference | 0.93778 | 0.108 |
43DAP/reference | 0.92774 | 0.095 |
47DAP/reference | 0.96954 | 0.259 |
52DAP/reference | 0.89111 | 0.18 |
57DAP/reference | 0.97669 | 0.416 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01813 | 0.966 |
26DAP/20DAP | 0.93994 | 0.512 |
34DAP/26DAP | 1.01733 | 1 |
51DAP/34DAP | 1.01833 | 0.936 |
52DAP/51DAP | 1.03522 | 0.704 |
53DAP/52DAP | 0.98947 | 0.97 |
55DAP/53DAP | 1.01629 | 0.911 |
57DAP/55DAP | 0.98661 | 0.925 |
62DAP/57DAP | 1.17969 | 0.8 |
68DAP/62DAP | 1.05905 | 0.899 |
68DAP/14DAP | 1.11428 | 0.346 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00291 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.12905 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.48768 | 0.026 |
Immature Eggplant/Mature Eggplant | 1.04622 | 0.633 |
Ripe Pepper/Ripe Tomato | 0.47775 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.34929 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97758 | 0.961 |
1-1-2/M82 | 0.96515 | 1 |
12-2/M82 | 0.92214 | 0.955 |
12-4/M82 | 0.98403 | |
1-3/M82 | 0.98103 | 0.501 |
2-1-1/M82 | 0.97787 | 1 |
2-1/M82 | 1.12586 | 1 |
2-6/M82 | 0.94042 | 1 |
3-2/M82 | 1.00836 | |
4-1-1/M82 | 0.96532 | 1 |
4-1/M82 | 0.90697 | |
4-3-2/M82 | 1.522 | |
4-3/M82 | 0.93656 | 0.72 |
5-3/M82 | 0.97611 | 1 |
6-2/M82 | 0.95659 | 1 |
6-3/M82 | 0.99295 | 1 |
7-1/M82 | 1.01577 | 1 |
7-2/M82 | 0.95131 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.64071 | |
IL12-4/WTpooled | 1.67423 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.29837 | 0.785 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.64708 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04196 | 0.921 |
DC3000/delta hrp 6h | 1.4299 | 1 |
DC3000/delta hrp 12h | 0.93731 | |
DC3000/delta hrp 24h | 0.97411 | 0.831 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09396 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.06733 | 0.453 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05309 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.88739 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97988 | 1 |
Var 0h | 0.91727 | 0.332 |
Var 12h I row2-row1 | 1.20384 | 0.379 |
Var 12h NI row2-row1 | 1.05987 | 1 |
Var 36h I row2-row1 | 0.99411 | 1 |
Var 36h NI row2-row1 | 1.00715 | 1 |
Var 60h I row2-row1 | 1.15102 | 0.562 |
Var 60h NI row2-row1 | 1.10089 | 0.904 |
Time course 0hI-0hNI | 1.0097 | 1 |
Time course 12hI-12hNI | 1.06707 | 0.684 |
Time course 36hI-36hNI | 0.95628 | 0.403 |
Time course 60hI-60hNI | 1.02991 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19323 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.31174 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.32663 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02329 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8003 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79609 | 1 |
Manapal/WT (break) | 1.06118 | 1 |
Manapal/WT (red) | 0.84506 | 0.424 |
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