Expression of 1-1-7.3.16.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.012811
27DAP/17DAP0.981020.967
39DAP/27DAP1.120040.858
41DAP/39DAP1.146770.685
42DAP/41DAP1.129580.945
43DAP/42DAP0.99640.937
47DAP/43DAP1.053090.884
52DAP/47DAP1.418930.43
57DAP/52DAP0.899690.852

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.106190.105
17DAP/reference1.062260.059
27DAP/reference0.980860.623
39DAP/reference1.012380.639
41DAP/reference1.01381
42DAP/reference1.021220.869
43DAP/reference1.033580.471
47DAP/reference1.020460.773
52DAP/reference1.000370.73
57DAP/reference0.99920.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008541
27DAP/17DAP1.071430.848
39DAP/27DAP1.025340.663
41DAP/39DAP1.06290.682
42DAP/41DAP1.038320.74
43DAP/42DAP1.009930.627
47DAP/43DAP1.025080.724
52DAP/47DAP0.980690.905
57DAP/52DAP0.986880.745
57DAP/7DAP0.892591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879790.095
17DAP/reference0.921560.056
27DAP/reference0.982930.53
39DAP/reference0.873670.021
41DAP/reference0.961730.223
42DAP/reference0.925430.077
43DAP/reference0.869120.013
47DAP/reference0.954980.168
52DAP/reference0.892430.03
57DAP/reference0.871770.105

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.977440.655
17DAP/reference0.984830.594
27DAP/reference1.039180.86
39DAP/reference1.029470.912
41DAP/reference0.957040.148
42DAP/reference0.978290.534
43DAP/reference0.98410.657
47DAP/reference0.953350.194
52DAP/reference0.97950.38
57DAP/reference0.947760.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962910.127
17DAP/reference0.9610.358
27DAP/reference0.982580.594
39DAP/reference0.880820.04
41DAP/reference0.910880.077
42DAP/reference0.937780.108
43DAP/reference0.927740.095
47DAP/reference0.969540.259
52DAP/reference0.891110.18
57DAP/reference0.976690.416

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.018130.966
26DAP/20DAP0.939940.512
34DAP/26DAP1.017331
51DAP/34DAP1.018330.936
52DAP/51DAP1.035220.704
53DAP/52DAP0.989470.97
55DAP/53DAP1.016290.911
57DAP/55DAP0.986610.925
62DAP/57DAP1.179690.8
68DAP/62DAP1.059050.899
68DAP/14DAP1.114280.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.002911

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.129050.287
Mature Green Tomato/Ripe Tomato0.487680.026
Immature Eggplant/Mature Eggplant1.046220.633
Ripe Pepper/Ripe Tomato0.477750.293
Mature Eggplant/Ripe Tomato0.349291

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.977580.961
1-1-2/M820.965151
12-2/M820.922140.955
12-4/M820.98403
1-3/M820.981030.501
2-1-1/M820.977871
2-1/M821.125861
2-6/M820.940421
3-2/M821.00836
4-1-1/M820.965321
4-1/M820.90697
4-3-2/M821.522
4-3/M820.936560.72
5-3/M820.976111
6-2/M820.956591
6-3/M820.992951
7-1/M821.015771
7-2/M820.951310.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.64071
IL12-4/WTpooled1.67423
IL1-4/WTpooledN/AN/A
WT/WTpooled1.298370.785

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.64708

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041960.921
DC3000/delta hrp 6h1.42991
DC3000/delta hrp 12h0.93731
DC3000/delta hrp 24h0.974110.831

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.093960.11
DC3000 delta B/DC3000 delta AB1.067330.453

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.053091
Exp 36hN/AN/A
Exp 60h0.887390.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979881
Var 0h0.917270.332
Var 12h I row2-row11.203840.379
Var 12h NI row2-row11.059871
Var 36h I row2-row10.994111
Var 36h NI row2-row11.007151
Var 60h I row2-row11.151020.562
Var 60h NI row2-row11.100890.904
Time course 0hI-0hNI1.00971
Time course 12hI-12hNI1.067070.684
Time course 36hI-36hNI0.956280.403
Time course 60hI-60hNI1.029910.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.193230.347
transgenic ySAMdc/azygous control (breaker)1.311740.248
transgenic ySAMdc/azygous control (red)1.326630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023290.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.80030.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.796091
Manapal/WT (break)1.061181
Manapal/WT (red)0.845060.424