Expression of 1-1-7.3.16.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.53345 | 0.365 |
27DAP/17DAP | 1.10628 | 0.859 |
39DAP/27DAP | 1.07994 | 0.876 |
41DAP/39DAP | 1.01812 | 0.964 |
42DAP/41DAP | 0.92702 | 1 |
43DAP/42DAP | 1.1116 | 0.94 |
47DAP/43DAP | 1.2111 | 0.609 |
52DAP/47DAP | 1.07654 | 0.916 |
57DAP/52DAP | 1.12615 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88079 | 0.07 |
17DAP/reference | 1.03397 | 0.585 |
27DAP/reference | 1.03016 | 0.771 |
39DAP/reference | 0.96025 | 0.437 |
41DAP/reference | 0.82076 | 0.065 |
42DAP/reference | 0.82815 | 0.001 |
43DAP/reference | 0.92107 | 0.073 |
47DAP/reference | 0.89321 | 0.019 |
52DAP/reference | 0.98098 | 0.53 |
57DAP/reference | 1.02264 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94716 | 0.595 |
27DAP/17DAP | 1.04356 | 0.915 |
39DAP/27DAP | 1.14567 | 0.418 |
41DAP/39DAP | 0.86555 | 0.256 |
42DAP/41DAP | 0.98402 | 0.772 |
43DAP/42DAP | 1.06912 | 0.664 |
47DAP/43DAP | 1.0625 | 0.822 |
52DAP/47DAP | 0.97643 | 0.902 |
57DAP/52DAP | 0.9553 | 0.668 |
57DAP/7DAP | 1.19544 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87302 | 0.146 |
17DAP/reference | 0.7458 | 0.044 |
27DAP/reference | 0.91368 | 0.109 |
39DAP/reference | 0.90111 | 0.17 |
41DAP/reference | 0.85766 | 0.043 |
42DAP/reference | 0.92047 | 0.2 |
43DAP/reference | 0.90103 | 0.183 |
47DAP/reference | 0.87374 | 0.128 |
52DAP/reference | 0.86063 | 0.066 |
57DAP/reference | 0.83322 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85616 | 0.134 |
17DAP/reference | 0.85018 | 0.063 |
27DAP/reference | 0.81074 | 0.036 |
39DAP/reference | 0.98456 | 0.569 |
41DAP/reference | 0.80325 | 0.027 |
42DAP/reference | 0.85427 | 0.046 |
43DAP/reference | 0.87158 | 0.201 |
47DAP/reference | 0.84266 | 0.023 |
52DAP/reference | 0.82965 | 0.014 |
57DAP/reference | 0.79422 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87399 | 0.119 |
17DAP/reference | 1.02312 | 0.956 |
27DAP/reference | 0.96092 | 0.442 |
39DAP/reference | 0.86871 | 0.043 |
41DAP/reference | 0.94365 | 0.371 |
42DAP/reference | 1.00448 | 1 |
43DAP/reference | 1.05577 | 0.779 |
47DAP/reference | 0.99814 | 0.687 |
52DAP/reference | 0.86727 | 0.22 |
57DAP/reference | 0.93959 | 0.293 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.29334 | 0.786 |
26DAP/20DAP | 0.94247 | 1 |
34DAP/26DAP | 1.45652 | 0.819 |
51DAP/34DAP | 0.87838 | 0.458 |
52DAP/51DAP | 1.06245 | 0.808 |
53DAP/52DAP | 0.81894 | 0.21 |
55DAP/53DAP | 0.97701 | 0.82 |
57DAP/55DAP | 1.1497 | 0.841 |
62DAP/57DAP | 0.89309 | 0.681 |
68DAP/62DAP | 1.24709 | 0.945 |
68DAP/14DAP | 0.8949 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.55856 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.38079 | 0.166 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.0199 | 1 |
Mature Eggplant/Ripe Tomato | 0.71443 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.29378 | 0.536 |
1-1-2/M82 | 0.96304 | 1 |
12-2/M82 | 1.27901 | 1 |
12-4/M82 | 1.19411 | |
1-3/M82 | 0.72419 | 0.378 |
2-1-1/M82 | 1.07819 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04813 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.06207 | 1 |
4-1/M82 | 1.14247 | |
4-3-2/M82 | 0.791 | 0.487 |
4-3/M82 | 0.97787 | 1 |
5-3/M82 | 1.03627 | 1 |
6-2/M82 | 0.79382 | 1 |
6-3/M82 | 0.98341 | 1 |
7-1/M82 | 1.12732 | |
7-2/M82 | 0.7479 | 0.527 |
9-3-2/M82 | 0.83722 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.08566 | 0.362 |
IL12-4/WTpooled | 1.22674 | |
IL1-4/WTpooled | 0.87562 | 0.562 |
WT/WTpooled | 1.12293 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94286 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99322 | 1 |
DC3000/delta hrp 6h | 0.82304 | |
DC3000/delta hrp 12h | 0.97465 | 1 |
DC3000/delta hrp 24h | 0.90707 | 0.503 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94558 | 1 |
Exp 36h | 0.84603 | 0.699 |
Exp 60h | 0.73871 | 0.196 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00012 | 1 |
Var 0h | 1.03119 | 0.98 |
Var 12h I row2-row1 | 1.03906 | 1 |
Var 12h NI row2-row1 | 1.14519 | 1 |
Var 36h I row2-row1 | 0.8684 | 0.438 |
Var 36h NI row2-row1 | 1.30339 | 1 |
Var 60h I row2-row1 | 1.07645 | 0.543 |
Var 60h NI row2-row1 | 1.27133 | 0.904 |
Time course 0hI-0hNI | 0.88494 | 0.329 |
Time course 12hI-12hNI | 0.93184 | 0.377 |
Time course 36hI-36hNI | 0.75599 | 0.027 |
Time course 60hI-60hNI | 0.33652 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0073 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.29337 | 0.172 |
transgenic ySAMdc/azygous control (red) | 0.95347 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9646 | 0.418 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04505 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.32255 | 0.088 |
Manapal/WT (break) | 1.05205 | 1 |
Manapal/WT (red) | 1.12099 | 0.413 |
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