Expression of 1-1-7.3.16.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.533450.365
27DAP/17DAP1.106280.859
39DAP/27DAP1.079940.876
41DAP/39DAP1.018120.964
42DAP/41DAP0.927021
43DAP/42DAP1.11160.94
47DAP/43DAP1.21110.609
52DAP/47DAP1.076540.916
57DAP/52DAP1.126150.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.880790.07
17DAP/reference1.033970.585
27DAP/reference1.030160.771
39DAP/reference0.960250.437
41DAP/reference0.820760.065
42DAP/reference0.828150.001
43DAP/reference0.921070.073
47DAP/reference0.893210.019
52DAP/reference0.980980.53
57DAP/reference1.022641

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.947160.595
27DAP/17DAP1.043560.915
39DAP/27DAP1.145670.418
41DAP/39DAP0.865550.256
42DAP/41DAP0.984020.772
43DAP/42DAP1.069120.664
47DAP/43DAP1.06250.822
52DAP/47DAP0.976430.902
57DAP/52DAP0.95530.668
57DAP/7DAP1.195440.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873020.146
17DAP/reference0.74580.044
27DAP/reference0.913680.109
39DAP/reference0.901110.17
41DAP/reference0.857660.043
42DAP/reference0.920470.2
43DAP/reference0.901030.183
47DAP/reference0.873740.128
52DAP/reference0.860630.066
57DAP/reference0.833220.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.856160.134
17DAP/reference0.850180.063
27DAP/reference0.810740.036
39DAP/reference0.984560.569
41DAP/reference0.803250.027
42DAP/reference0.854270.046
43DAP/reference0.871580.201
47DAP/reference0.842660.023
52DAP/reference0.829650.014
57DAP/reference0.794220.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873990.119
17DAP/reference1.023120.956
27DAP/reference0.960920.442
39DAP/reference0.868710.043
41DAP/reference0.943650.371
42DAP/reference1.004481
43DAP/reference1.055770.779
47DAP/reference0.998140.687
52DAP/reference0.867270.22
57DAP/reference0.939590.293

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.293340.786
26DAP/20DAP0.942471
34DAP/26DAP1.456520.819
51DAP/34DAP0.878380.458
52DAP/51DAP1.062450.808
53DAP/52DAP0.818940.21
55DAP/53DAP0.977010.82
57DAP/55DAP1.14970.841
62DAP/57DAP0.893090.681
68DAP/62DAP1.247090.945
68DAP/14DAP0.89491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.558560.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.380790.166
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.01991
Mature Eggplant/Ripe Tomato0.71443

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.293780.536
1-1-2/M820.963041
12-2/M821.279011
12-4/M821.19411
1-3/M820.724190.378
2-1-1/M821.078190.764
2-1/M82N/AN/A
2-6/M821.048131
3-2/M82N/AN/A
4-1-1/M821.062071
4-1/M821.14247
4-3-2/M820.7910.487
4-3/M820.977871
5-3/M821.036271
6-2/M820.793821
6-3/M820.983411
7-1/M821.12732
7-2/M820.74790.527
9-3-2/M820.837221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.085660.362
IL12-4/WTpooled1.22674
IL1-4/WTpooled0.875620.562
WT/WTpooled1.122931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.942860.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993221
DC3000/delta hrp 6h0.82304
DC3000/delta hrp 12h0.974651
DC3000/delta hrp 24h0.907070.503

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.945581
Exp 36h0.846030.699
Exp 60h0.738710.196

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000121
Var 0h1.031190.98
Var 12h I row2-row11.039061
Var 12h NI row2-row11.145191
Var 36h I row2-row10.86840.438
Var 36h NI row2-row11.303391
Var 60h I row2-row11.076450.543
Var 60h NI row2-row11.271330.904
Time course 0hI-0hNI0.884940.329
Time course 12hI-12hNI0.931840.377
Time course 36hI-36hNI0.755990.027
Time course 60hI-60hNI0.336520.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.00731
transgenic ySAMdc/azygous control (breaker)1.293370.172
transgenic ySAMdc/azygous control (red)0.953471

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.96460.418

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.045050.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.322550.088
Manapal/WT (break)1.052051
Manapal/WT (red)1.120990.413