Expression of 1-1-7.3.16.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93506 | 0.627 |
27DAP/17DAP | 0.82829 | 0.571 |
39DAP/27DAP | 0.85619 | 0.544 |
41DAP/39DAP | 1.02423 | 0.839 |
42DAP/41DAP | 1.26684 | 0.938 |
43DAP/42DAP | 0.976 | 0.925 |
47DAP/43DAP | 0.78851 | 0.395 |
52DAP/47DAP | 2.00928 | 0.397 |
57DAP/52DAP | 1.05703 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96082 | 0.412 |
17DAP/reference | 0.90869 | 0.031 |
27DAP/reference | 0.98601 | 0.711 |
39DAP/reference | 1.08288 | 0.054 |
41DAP/reference | 0.99875 | 1 |
42DAP/reference | 0.93244 | 0.048 |
43DAP/reference | 0.91066 | 0.098 |
47DAP/reference | 0.9121 | 0.09 |
52DAP/reference | 1.0247 | 1 |
57DAP/reference | 1.03055 | 0.802 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76976 | 0.096 |
27DAP/17DAP | 1.19014 | 0.805 |
39DAP/27DAP | 1.28139 | 0.46 |
41DAP/39DAP | 1.66931 | 0.641 |
42DAP/41DAP | 0.94401 | 0.617 |
43DAP/42DAP | 1.08035 | 0.664 |
47DAP/43DAP | 1.08105 | 0.884 |
52DAP/47DAP | 1.05731 | 0.868 |
57DAP/52DAP | 0.91857 | 0.596 |
57DAP/7DAP | 1.50167 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77454 | 0.157 |
17DAP/reference | 0.84567 | 0.072 |
27DAP/reference | 1.41618 | 0.015 |
39DAP/reference | 0.78411 | 0.039 |
41DAP/reference | 0.85805 | 0.082 |
42DAP/reference | 0.9851 | 0.554 |
43DAP/reference | 0.7139 | 0.064 |
47DAP/reference | 0.86189 | 0.222 |
52DAP/reference | 0.81466 | 0.046 |
57DAP/reference | 0.8524 | 0.064 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99074 | 0.831 |
17DAP/reference | 1.13401 | 0.092 |
27DAP/reference | 1.19063 | 0.38 |
39DAP/reference | 1.18305 | 0.233 |
41DAP/reference | 1.16276 | 0.149 |
42DAP/reference | 1.08442 | 0.68 |
43DAP/reference | 1.86469 | 0.011 |
47DAP/reference | 1.23341 | 0.046 |
52DAP/reference | 1.18628 | 0.24 |
57DAP/reference | 1.04929 | 0.755 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7898 | 0.059 |
17DAP/reference | 0.864 | 0.262 |
27DAP/reference | 0.83927 | 0.119 |
39DAP/reference | 0.8789 | 0.133 |
41DAP/reference | 1.16758 | 0.796 |
42DAP/reference | 1.24724 | 0.036 |
43DAP/reference | 0.81363 | 0.088 |
47DAP/reference | 1.02677 | 0.847 |
52DAP/reference | 1.05493 | 0.837 |
57DAP/reference | 1.30207 | 0.214 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09191 | 0.966 |
26DAP/20DAP | 0.81552 | 0.512 |
34DAP/26DAP | 0.9238 | 0.322 |
51DAP/34DAP | 0.97782 | 0.893 |
52DAP/51DAP | 1.13689 | 0.708 |
53DAP/52DAP | 0.9615 | 0.835 |
55DAP/53DAP | 1.23628 | 0.387 |
57DAP/55DAP | 0.79881 | 0.178 |
62DAP/57DAP | 1.00698 | 1 |
68DAP/62DAP | 1.35835 | 0.539 |
68DAP/14DAP | 0.95167 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00551 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.1592 | 0.69 |
Immature Eggplant/Mature Eggplant | 2.73808 | 0.051 |
Ripe Pepper/Ripe Tomato | 0.2754 | |
Mature Eggplant/Ripe Tomato | 0.91005 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10067 | 1 |
1-1-2/M82 | 1.03007 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.1962 | |
1-3/M82 | 0.44103 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00995 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.90081 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.01958 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.86804 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.83243 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.2111 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.19349 | 0.362 |
IL12-4/WTpooled | 1.22318 | 0.532 |
IL1-4/WTpooled | 0.97515 | 1 |
WT/WTpooled | 1.00065 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.23101 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91896 | 1 |
DC3000/delta hrp 6h | 1.48988 | 1 |
DC3000/delta hrp 12h | 1.11758 | 1 |
DC3000/delta hrp 24h | 1.21852 | 0.165 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.54465 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.4658 | 0.089 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23947 | 1 |
Exp 36h | 1.18548 | 1 |
Exp 60h | 1.273 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9723 | 1 |
Var 0h | 1.07884 | 0.936 |
Var 12h I row2-row1 | 0.84893 | 0.363 |
Var 12h NI row2-row1 | 1.03888 | 1 |
Var 36h I row2-row1 | 1.0085 | 1 |
Var 36h NI row2-row1 | 0.86454 | 0.584 |
Var 60h I row2-row1 | 0.9731 | 1 |
Var 60h NI row2-row1 | 0.75669 | 0.572 |
Time course 0hI-0hNI | 1.00069 | 1 |
Time course 12hI-12hNI | 0.98887 | 0.964 |
Time course 36hI-36hNI | 1.8009 | 0.005 |
Time course 60hI-60hNI | 1.98604 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10856 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 2.57596 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08487 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12277 | 0.063 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.51733 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.57262 | 0.105 |
Manapal/WT (break) | 1.16532 | 1 |
Manapal/WT (red) | 0.76087 | 0.242 |
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