Expression of 1-1-7.3.16.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.935060.627
27DAP/17DAP0.828290.571
39DAP/27DAP0.856190.544
41DAP/39DAP1.024230.839
42DAP/41DAP1.266840.938
43DAP/42DAP0.9760.925
47DAP/43DAP0.788510.395
52DAP/47DAP2.009280.397
57DAP/52DAP1.057030.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.960820.412
17DAP/reference0.908690.031
27DAP/reference0.986010.711
39DAP/reference1.082880.054
41DAP/reference0.998751
42DAP/reference0.932440.048
43DAP/reference0.910660.098
47DAP/reference0.91210.09
52DAP/reference1.02471
57DAP/reference1.030550.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.769760.096
27DAP/17DAP1.190140.805
39DAP/27DAP1.281390.46
41DAP/39DAP1.669310.641
42DAP/41DAP0.944010.617
43DAP/42DAP1.080350.664
47DAP/43DAP1.081050.884
52DAP/47DAP1.057310.868
57DAP/52DAP0.918570.596
57DAP/7DAP1.501671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.774540.157
17DAP/reference0.845670.072
27DAP/reference1.416180.015
39DAP/reference0.784110.039
41DAP/reference0.858050.082
42DAP/reference0.98510.554
43DAP/reference0.71390.064
47DAP/reference0.861890.222
52DAP/reference0.814660.046
57DAP/reference0.85240.064

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990740.831
17DAP/reference1.134010.092
27DAP/reference1.190630.38
39DAP/reference1.183050.233
41DAP/reference1.162760.149
42DAP/reference1.084420.68
43DAP/reference1.864690.011
47DAP/reference1.233410.046
52DAP/reference1.186280.24
57DAP/reference1.049290.755

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.78980.059
17DAP/reference0.8640.262
27DAP/reference0.839270.119
39DAP/reference0.87890.133
41DAP/reference1.167580.796
42DAP/reference1.247240.036
43DAP/reference0.813630.088
47DAP/reference1.026770.847
52DAP/reference1.054930.837
57DAP/reference1.302070.214

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.091910.966
26DAP/20DAP0.815520.512
34DAP/26DAP0.92380.322
51DAP/34DAP0.977820.893
52DAP/51DAP1.136890.708
53DAP/52DAP0.96150.835
55DAP/53DAP1.236280.387
57DAP/55DAP0.798810.178
62DAP/57DAP1.006981
68DAP/62DAP1.358350.539
68DAP/14DAP0.951671

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.005510.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.15920.69
Immature Eggplant/Mature Eggplant2.738080.051
Ripe Pepper/Ripe Tomato0.2754
Mature Eggplant/Ripe Tomato0.91005

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.100671
1-1-2/M821.030071
12-2/M82N/AN/A
12-4/M821.1962
1-3/M820.44103
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.009951
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.90081
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.019581
6-2/M82N/AN/A
6-3/M820.868041
7-1/M82N/AN/A
7-2/M820.832430.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.21110.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.193490.362
IL12-4/WTpooled1.223180.532
IL1-4/WTpooled0.975151
WT/WTpooled1.000651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.231010.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.918961
DC3000/delta hrp 6h1.489881
DC3000/delta hrp 12h1.117581
DC3000/delta hrp 24h1.218520.165

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.544650.042
DC3000 delta B/DC3000 delta AB1.46580.089

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.239471
Exp 36h1.185481
Exp 60h1.2730.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97231
Var 0h1.078840.936
Var 12h I row2-row10.848930.363
Var 12h NI row2-row11.038881
Var 36h I row2-row11.00851
Var 36h NI row2-row10.864540.584
Var 60h I row2-row10.97311
Var 60h NI row2-row10.756690.572
Time course 0hI-0hNI1.000691
Time course 12hI-12hNI0.988870.964
Time course 36hI-36hNI1.80090.005
Time course 60hI-60hNI1.986040.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.108560.863
transgenic ySAMdc/azygous control (breaker)2.575961
transgenic ySAMdc/azygous control (red)1.084871

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.122770.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.517330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.572620.105
Manapal/WT (break)1.165321
Manapal/WT (red)0.760870.242