Expression of 1-1-7.3.17.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.066 | 0.77 |
27DAP/17DAP | 0.99048 | 0.804 |
39DAP/27DAP | 1.09866 | 0.779 |
41DAP/39DAP | 0.90286 | 0.597 |
42DAP/41DAP | 1.25127 | 0.752 |
43DAP/42DAP | 1.64343 | 0.051 |
47DAP/43DAP | 0.79346 | 0.382 |
52DAP/47DAP | 0.87421 | 0.633 |
57DAP/52DAP | 1.02161 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11533 | 0.994 |
17DAP/reference | 1.09627 | 0.492 |
27DAP/reference | 1.34558 | 0.033 |
39DAP/reference | 1.29111 | 0.132 |
41DAP/reference | 1.16093 | 0.111 |
42DAP/reference | 2.08753 | 0.001 |
43DAP/reference | 1.46203 | 0.012 |
47DAP/reference | 1.44936 | 0.003 |
52DAP/reference | 1.67555 | 0.013 |
57DAP/reference | 1.41855 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93174 | 0.454 |
27DAP/17DAP | 1.14537 | 0.632 |
39DAP/27DAP | 0.82569 | 0.279 |
41DAP/39DAP | 1.12119 | 0.801 |
42DAP/41DAP | 1.06334 | 0.947 |
43DAP/42DAP | 1.5647 | 0.016 |
47DAP/43DAP | 0.87505 | 0.115 |
52DAP/47DAP | 0.83592 | 0.171 |
57DAP/52DAP | 1.29657 | 0.188 |
57DAP/7DAP | 1.18017 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8745 | 0.05 |
17DAP/reference | 1.41629 | 0.084 |
27DAP/reference | 0.94703 | 0.325 |
39DAP/reference | 1.06004 | 0.819 |
41DAP/reference | 1.15933 | 0.507 |
42DAP/reference | 1.17892 | 0.308 |
43DAP/reference | 0.88894 | 0.046 |
47DAP/reference | 1.30726 | 0.13 |
52DAP/reference | 0.93467 | 0.196 |
57DAP/reference | 1.01341 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32609 | 0.41 |
17DAP/reference | 1.09759 | 0.599 |
27DAP/reference | 1.25249 | 0.208 |
39DAP/reference | 1.06689 | 0.935 |
41DAP/reference | 1.36701 | 0.06 |
42DAP/reference | 1.23291 | 0.309 |
43DAP/reference | 1.21334 | 0.466 |
47DAP/reference | 1.11293 | 0.153 |
52DAP/reference | 1.18368 | 0.417 |
57DAP/reference | 0.99558 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55625 | 0.025 |
17DAP/reference | 1.09345 | 0.572 |
27DAP/reference | 1.14123 | 0.408 |
39DAP/reference | 1.03008 | 0.935 |
41DAP/reference | 1.04189 | 0.961 |
42DAP/reference | 1.08486 | 1 |
43DAP/reference | 1.21349 | 0.993 |
47DAP/reference | 1.10005 | 0.543 |
52DAP/reference | 0.87866 | 0.385 |
57DAP/reference | 1.47739 | 0.071 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74583 | 1 |
26DAP/20DAP | 1.45079 | 0.195 |
34DAP/26DAP | 0.85495 | 0.61 |
51DAP/34DAP | 1.08095 | 0.785 |
52DAP/51DAP | 1.02195 | 0.925 |
53DAP/52DAP | 0.94141 | 0.772 |
55DAP/53DAP | 0.76264 | 0.037 |
57DAP/55DAP | 1.20374 | 0.881 |
62DAP/57DAP | 1.38749 | 0.767 |
68DAP/62DAP | 0.84048 | 0.747 |
68DAP/14DAP | 0.89335 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.59549 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.10099 | 0.02 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.77359 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.63402 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.87515 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.33652 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.53437 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06027 | 1 |
IL2-6/WTpooled | 0.94764 | 1 |
IL7-5/WTpooled | 0.73742 | |
IL7-3/WTpooled | 1.08005 | 1 |
IL12-4/WTpooled | 0.9032 | 1 |
IL1-4/WTpooled | 0.8209 | 0.834 |
WT/WTpooled | 1.0428 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93749 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0988 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.79583 | 0.085 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.72556 | 0.065 |
DC3000 delta B/DC3000 delta AB | 0.75091 | 0.093 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99583 | 1 |
Var 0h | 0.98297 | 1 |
Var 12h I row2-row1 | 0.86527 | 0.31 |
Var 12h NI row2-row1 | 1.2647 | 0.34 |
Var 36h I row2-row1 | 1.21808 | 0.489 |
Var 36h NI row2-row1 | 1.00495 | 1 |
Var 60h I row2-row1 | 0.91425 | 0.293 |
Var 60h NI row2-row1 | 0.98319 | 1 |
Time course 0hI-0hNI | 1.07047 | 0.852 |
Time course 12hI-12hNI | 0.93277 | 0.568 |
Time course 36hI-36hNI | 0.76233 | 0.024 |
Time course 60hI-60hNI | 0.48753 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92348 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.56427 | 0.172 |
transgenic ySAMdc/azygous control (red) | 0.91824 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77201 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98847 | 1 |
Manapal/WT (break) | 1.05949 | 1 |
Manapal/WT (red) | 1.19901 | 0.126 |
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