Expression of 1-1-7.3.17.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.0660.77
27DAP/17DAP0.990480.804
39DAP/27DAP1.098660.779
41DAP/39DAP0.902860.597
42DAP/41DAP1.251270.752
43DAP/42DAP1.643430.051
47DAP/43DAP0.793460.382
52DAP/47DAP0.874210.633
57DAP/52DAP1.021610.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.115330.994
17DAP/reference1.096270.492
27DAP/reference1.345580.033
39DAP/reference1.291110.132
41DAP/reference1.160930.111
42DAP/reference2.087530.001
43DAP/reference1.462030.012
47DAP/reference1.449360.003
52DAP/reference1.675550.013
57DAP/reference1.418550.063

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.931740.454
27DAP/17DAP1.145370.632
39DAP/27DAP0.825690.279
41DAP/39DAP1.121190.801
42DAP/41DAP1.063340.947
43DAP/42DAP1.56470.016
47DAP/43DAP0.875050.115
52DAP/47DAP0.835920.171
57DAP/52DAP1.296570.188
57DAP/7DAP1.180171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.87450.05
17DAP/reference1.416290.084
27DAP/reference0.947030.325
39DAP/reference1.060040.819
41DAP/reference1.159330.507
42DAP/reference1.178920.308
43DAP/reference0.888940.046
47DAP/reference1.307260.13
52DAP/reference0.934670.196
57DAP/reference1.013411

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.326090.41
17DAP/reference1.097590.599
27DAP/reference1.252490.208
39DAP/reference1.066890.935
41DAP/reference1.367010.06
42DAP/reference1.232910.309
43DAP/reference1.213340.466
47DAP/reference1.112930.153
52DAP/reference1.183680.417
57DAP/reference0.995580.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.556250.025
17DAP/reference1.093450.572
27DAP/reference1.141230.408
39DAP/reference1.030080.935
41DAP/reference1.041890.961
42DAP/reference1.084861
43DAP/reference1.213490.993
47DAP/reference1.100050.543
52DAP/reference0.878660.385
57DAP/reference1.477390.071

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.745831
26DAP/20DAP1.450790.195
34DAP/26DAP0.854950.61
51DAP/34DAP1.080950.785
52DAP/51DAP1.021950.925
53DAP/52DAP0.941410.772
55DAP/53DAP0.762640.037
57DAP/55DAP1.203740.881
62DAP/57DAP1.387490.767
68DAP/62DAP0.840480.747
68DAP/14DAP0.89335

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.595490.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.100990.02
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.773591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.63402
12-2/M82N/AN/A
12-4/M820.87515
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.336520.508
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.53437

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.060271
IL2-6/WTpooled0.947641
IL7-5/WTpooled0.73742
IL7-3/WTpooled1.080051
IL12-4/WTpooled0.90321
IL1-4/WTpooled0.82090.834
WT/WTpooled1.04281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.937490.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.09880.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.795830.085

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.725560.065
DC3000 delta B/DC3000 delta AB0.750910.093

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995831
Var 0h0.982971
Var 12h I row2-row10.865270.31
Var 12h NI row2-row11.26470.34
Var 36h I row2-row11.218080.489
Var 36h NI row2-row11.004951
Var 60h I row2-row10.914250.293
Var 60h NI row2-row10.983191
Time course 0hI-0hNI1.070470.852
Time course 12hI-12hNI0.932770.568
Time course 36hI-36hNI0.762330.024
Time course 60hI-60hNI0.487530.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923480.722
transgenic ySAMdc/azygous control (breaker)1.564270.172
transgenic ySAMdc/azygous control (red)0.918241

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.772010.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.988471
Manapal/WT (break)1.059491
Manapal/WT (red)1.199010.126