Expression of 1-1-7.3.17.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19236 | 0.588 |
27DAP/17DAP | 1.34793 | 0.842 |
39DAP/27DAP | 0.79738 | 0.443 |
41DAP/39DAP | 1.47508 | 0.318 |
42DAP/41DAP | 1.35154 | 0.599 |
43DAP/42DAP | 0.98408 | 0.918 |
47DAP/43DAP | 1.13589 | 0.52 |
52DAP/47DAP | 1.0408 | 0.906 |
57DAP/52DAP | 0.905 | 0.852 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07592 | 0.55 |
17DAP/reference | 0.9663 | 0.664 |
27DAP/reference | 1.16991 | 0.271 |
39DAP/reference | 0.96532 | 0.611 |
41DAP/reference | 0.93472 | 0.341 |
42DAP/reference | 1.23881 | 0.103 |
43DAP/reference | 0.9764 | 0.675 |
47DAP/reference | 1.20235 | 0.065 |
52DAP/reference | 1.52711 | 0.017 |
57DAP/reference | 1.58445 | 0.025 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22312 | 0.379 |
27DAP/17DAP | 1.04576 | 1 |
39DAP/27DAP | 1.02264 | 1 |
41DAP/39DAP | 1.21137 | 0.682 |
42DAP/41DAP | 0.94868 | 0.635 |
43DAP/42DAP | 0.94174 | 0.665 |
47DAP/43DAP | 0.88912 | 0.31 |
52DAP/47DAP | 1.11652 | 0.689 |
57DAP/52DAP | 0.87895 | 0.48 |
57DAP/7DAP | 1.20951 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52291 | 0.043 |
17DAP/reference | 1.20453 | 0.035 |
27DAP/reference | 1.39603 | 0.03 |
39DAP/reference | 1.28571 | 0.028 |
41DAP/reference | 1.53368 | 0.008 |
42DAP/reference | 1.6537 | 0.007 |
43DAP/reference | 1.99826 | 0.006 |
47DAP/reference | 1.49321 | 0.145 |
52DAP/reference | 1.76397 | 0.015 |
57DAP/reference | 1.43375 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02967 | 0.993 |
17DAP/reference | 0.92839 | 0.389 |
27DAP/reference | 0.87182 | 0.249 |
39DAP/reference | 1.05811 | 0.935 |
41DAP/reference | 1.27082 | 0.122 |
42DAP/reference | 1.18483 | 0.509 |
43DAP/reference | 1.12041 | 1 |
47DAP/reference | 1.0755 | 0.454 |
52DAP/reference | 0.94098 | 0.327 |
57DAP/reference | 0.94242 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54056 | 0.019 |
17DAP/reference | 1.11366 | 0.612 |
27DAP/reference | 1.23882 | 0.188 |
39DAP/reference | 1.34874 | 0.02 |
41DAP/reference | 1.19536 | 0.067 |
42DAP/reference | 1.39578 | 0.012 |
43DAP/reference | 1.19218 | 0.128 |
47DAP/reference | 1.12181 | 0.847 |
52DAP/reference | 1.05075 | 0.952 |
57DAP/reference | 1.21096 | 0.428 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06643 | 1 |
26DAP/20DAP | 1.04062 | 1 |
34DAP/26DAP | 1.09364 | 1 |
51DAP/34DAP | 0.97299 | 0.807 |
52DAP/51DAP | 1.08086 | 0.904 |
53DAP/52DAP | 0.88546 | 0.695 |
55DAP/53DAP | 1.31949 | 0.335 |
57DAP/55DAP | 1.0656 | 0.969 |
62DAP/57DAP | 1.15461 | 0.868 |
68DAP/62DAP | 0.95484 | 0.81 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05134 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.91136 | 0.446 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.4618 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.37349 | |
4-3-2/M82 | 0.79807 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.26841 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.32855 | |
IL12-4/WTpooled | 1.35355 | |
IL1-4/WTpooled | 0.99956 | 1 |
WT/WTpooled | 0.96081 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.67008 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95598 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.10909 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.60965 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.60677 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0493 | 1 |
Var 0h | 1.0799 | 0.936 |
Var 12h I row2-row1 | 0.79503 | 0.467 |
Var 12h NI row2-row1 | 0.95831 | 0.906 |
Var 36h I row2-row1 | 0.96614 | 1 |
Var 36h NI row2-row1 | 1.08741 | 1 |
Var 60h I row2-row1 | 1.11623 | 0.543 |
Var 60h NI row2-row1 | 1.00309 | 1 |
Time course 0hI-0hNI | 1.06361 | 0.799 |
Time course 12hI-12hNI | 0.94197 | 0.612 |
Time course 36hI-36hNI | 0.86731 | 0.081 |
Time course 60hI-60hNI | 0.22274 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.44586 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.45341 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.10272 | 1 |
Manapal/WT (red) | N/A | N/A |
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