Expression of 1-1-7.3.17.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.192360.588
27DAP/17DAP1.347930.842
39DAP/27DAP0.797380.443
41DAP/39DAP1.475080.318
42DAP/41DAP1.351540.599
43DAP/42DAP0.984080.918
47DAP/43DAP1.135890.52
52DAP/47DAP1.04080.906
57DAP/52DAP0.9050.852

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.075920.55
17DAP/reference0.96630.664
27DAP/reference1.169910.271
39DAP/reference0.965320.611
41DAP/reference0.934720.341
42DAP/reference1.238810.103
43DAP/reference0.97640.675
47DAP/reference1.202350.065
52DAP/reference1.527110.017
57DAP/reference1.584450.025

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.223120.379
27DAP/17DAP1.045761
39DAP/27DAP1.022641
41DAP/39DAP1.211370.682
42DAP/41DAP0.948680.635
43DAP/42DAP0.941740.665
47DAP/43DAP0.889120.31
52DAP/47DAP1.116520.689
57DAP/52DAP0.878950.48
57DAP/7DAP1.209511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.522910.043
17DAP/reference1.204530.035
27DAP/reference1.396030.03
39DAP/reference1.285710.028
41DAP/reference1.533680.008
42DAP/reference1.65370.007
43DAP/reference1.998260.006
47DAP/reference1.493210.145
52DAP/reference1.763970.015
57DAP/reference1.433750.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029670.993
17DAP/reference0.928390.389
27DAP/reference0.871820.249
39DAP/reference1.058110.935
41DAP/reference1.270820.122
42DAP/reference1.184830.509
43DAP/reference1.120411
47DAP/reference1.07550.454
52DAP/reference0.940980.327
57DAP/reference0.942420.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.540560.019
17DAP/reference1.113660.612
27DAP/reference1.238820.188
39DAP/reference1.348740.02
41DAP/reference1.195360.067
42DAP/reference1.395780.012
43DAP/reference1.192180.128
47DAP/reference1.121810.847
52DAP/reference1.050750.952
57DAP/reference1.210960.428

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.066431
26DAP/20DAP1.040621
34DAP/26DAP1.093641
51DAP/34DAP0.972990.807
52DAP/51DAP1.080860.904
53DAP/52DAP0.885460.695
55DAP/53DAP1.319490.335
57DAP/55DAP1.06560.969
62DAP/57DAP1.154610.868
68DAP/62DAP0.954840.81
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.051341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.911360.446
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.4618
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.37349
4-3-2/M820.79807
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.26841
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.32855
IL12-4/WTpooled1.35355
IL1-4/WTpooled0.999561
WT/WTpooled0.960811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.670080.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.955981
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.109090.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.609650.023
DC3000 delta B/DC3000 delta AB0.606770.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.04931
Var 0h1.07990.936
Var 12h I row2-row10.795030.467
Var 12h NI row2-row10.958310.906
Var 36h I row2-row10.966141
Var 36h NI row2-row11.087411
Var 60h I row2-row11.116230.543
Var 60h NI row2-row11.003091
Time course 0hI-0hNI1.063610.799
Time course 12hI-12hNI0.941970.612
Time course 36hI-36hNI0.867310.081
Time course 60hI-60hNI0.222740.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.445861

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.453410.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.102721
Manapal/WT (red)N/AN/A