Expression of 1-1-7.3.17.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10058 | 0.932 |
27DAP/17DAP | 0.65059 | 0.257 |
39DAP/27DAP | 0.98546 | 0.769 |
41DAP/39DAP | 0.82364 | 0.358 |
42DAP/41DAP | 1.14509 | 0.971 |
43DAP/42DAP | 1.04289 | 0.937 |
47DAP/43DAP | 1.12281 | 0.68 |
52DAP/47DAP | 1.29299 | 0.67 |
57DAP/52DAP | 1.19273 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9776 | 0.513 |
17DAP/reference | 0.94656 | 0.536 |
27DAP/reference | 0.95636 | 0.642 |
39DAP/reference | 0.94172 | 0.565 |
41DAP/reference | 0.7776 | 0.009 |
42DAP/reference | 0.85002 | 0.059 |
43DAP/reference | 0.88026 | 0.037 |
47DAP/reference | 0.844 | 0.021 |
52DAP/reference | 1.05062 | 1 |
57DAP/reference | 1.1177 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15345 | 0.797 |
27DAP/17DAP | 0.95448 | 0.724 |
39DAP/27DAP | 1.13197 | 0.718 |
41DAP/39DAP | 1.45711 | 0.514 |
42DAP/41DAP | 0.97586 | 0.659 |
43DAP/42DAP | 1.04028 | 1 |
47DAP/43DAP | 0.9971 | 0.998 |
52DAP/47DAP | 0.96831 | 0.893 |
57DAP/52DAP | 1.11865 | 0.695 |
57DAP/7DAP | 0.92922 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98185 | 0.613 |
17DAP/reference | 1.08692 | 0.627 |
27DAP/reference | 1.01663 | 1 |
39DAP/reference | 1.2033 | 0.042 |
41DAP/reference | 1.05308 | 0.767 |
42DAP/reference | 1.23662 | 0.1 |
43DAP/reference | 1.22263 | 0.344 |
47DAP/reference | 0.98602 | 0.671 |
52DAP/reference | 0.89705 | 0.213 |
57DAP/reference | 1.00263 | 0.589 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78253 | 0.041 |
17DAP/reference | 0.76126 | 0.006 |
27DAP/reference | 0.82086 | 0.09 |
39DAP/reference | 0.91698 | 0.214 |
41DAP/reference | 0.79973 | 0.042 |
42DAP/reference | 0.93354 | 0.237 |
43DAP/reference | 0.9071 | 0.307 |
47DAP/reference | 0.96451 | 0.41 |
52DAP/reference | 0.84638 | 0.008 |
57DAP/reference | 0.8724 | 0.092 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83464 | 0.082 |
17DAP/reference | 0.96693 | 0.571 |
27DAP/reference | 1.21355 | 0.1 |
39DAP/reference | 1.04258 | 0.752 |
41DAP/reference | 0.96585 | 0.512 |
42DAP/reference | 0.91571 | 0.287 |
43DAP/reference | 0.9161 | 0.226 |
47DAP/reference | 0.92808 | 0.145 |
52DAP/reference | 1.31952 | 0.542 |
57DAP/reference | 0.87227 | 0.136 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1278 | 0.966 |
26DAP/20DAP | 0.68864 | 0.512 |
34DAP/26DAP | 1.52278 | 0.819 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.14877 | 0.733 |
53DAP/52DAP | 1.24678 | 0.552 |
55DAP/53DAP | 1.3794 | 0.693 |
57DAP/55DAP | 0.91507 | 0.754 |
62DAP/57DAP | 0.82676 | 0.466 |
68DAP/62DAP | 1.39157 | 0.035 |
68DAP/14DAP | 1.40089 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.82352 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.06819 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11876 | 0.742 |
1-1-2/M82 | 1.09285 | 1 |
12-2/M82 | 0.89758 | 0.955 |
12-4/M82 | 0.71146 | 0.619 |
1-3/M82 | 2.3077 | 0.26 |
2-1-1/M82 | 1.01711 | 1 |
2-1/M82 | 0.68087 | 0.519 |
2-6/M82 | 1.65751 | 0.329 |
3-2/M82 | 1.32546 | |
4-1-1/M82 | 1.46714 | 1 |
4-1/M82 | 0.93605 | |
4-3-2/M82 | 1.55263 | |
4-3/M82 | 2.47075 | 0.268 |
5-3/M82 | 0.52753 | 0.419 |
6-2/M82 | 0.26695 | 0.481 |
6-3/M82 | 1.04908 | 1 |
7-1/M82 | 0.95079 | |
7-2/M82 | 1.0863 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.23705 | 0.737 |
IL1-4/WTpooled | 0.92663 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24663 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.17757 | 0.914 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.13732 | 1 |
DC3000/delta hrp 24h | 1.08413 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.19784 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95639 | 1 |
Var 0h | 0.54171 | 0.146 |
Var 12h I row2-row1 | 1.06021 | 1 |
Var 12h NI row2-row1 | 0.88001 | 0.394 |
Var 36h I row2-row1 | 1.11897 | 1 |
Var 36h NI row2-row1 | 0.99331 | 1 |
Var 60h I row2-row1 | 0.81003 | 0.292 |
Var 60h NI row2-row1 | 0.87776 | 0.306 |
Time course 0hI-0hNI | 1.24096 | 0.719 |
Time course 12hI-12hNI | 1.37453 | 0.096 |
Time course 36hI-36hNI | 1.89254 | 0.008 |
Time course 60hI-60hNI | 1.62363 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.09539 | 1 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99026 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10237 | 0.093 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.18182 | 0.181 |
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