Expression of 1-1-7.3.17.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.100580.932
27DAP/17DAP0.650590.257
39DAP/27DAP0.985460.769
41DAP/39DAP0.823640.358
42DAP/41DAP1.145090.971
43DAP/42DAP1.042890.937
47DAP/43DAP1.122810.68
52DAP/47DAP1.292990.67
57DAP/52DAP1.192730.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.97760.513
17DAP/reference0.946560.536
27DAP/reference0.956360.642
39DAP/reference0.941720.565
41DAP/reference0.77760.009
42DAP/reference0.850020.059
43DAP/reference0.880260.037
47DAP/reference0.8440.021
52DAP/reference1.050621
57DAP/reference1.11770.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.153450.797
27DAP/17DAP0.954480.724
39DAP/27DAP1.131970.718
41DAP/39DAP1.457110.514
42DAP/41DAP0.975860.659
43DAP/42DAP1.040281
47DAP/43DAP0.99710.998
52DAP/47DAP0.968310.893
57DAP/52DAP1.118650.695
57DAP/7DAP0.929221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981850.613
17DAP/reference1.086920.627
27DAP/reference1.016631
39DAP/reference1.20330.042
41DAP/reference1.053080.767
42DAP/reference1.236620.1
43DAP/reference1.222630.344
47DAP/reference0.986020.671
52DAP/reference0.897050.213
57DAP/reference1.002630.589

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.782530.041
17DAP/reference0.761260.006
27DAP/reference0.820860.09
39DAP/reference0.916980.214
41DAP/reference0.799730.042
42DAP/reference0.933540.237
43DAP/reference0.90710.307
47DAP/reference0.964510.41
52DAP/reference0.846380.008
57DAP/reference0.87240.092

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834640.082
17DAP/reference0.966930.571
27DAP/reference1.213550.1
39DAP/reference1.042580.752
41DAP/reference0.965850.512
42DAP/reference0.915710.287
43DAP/reference0.91610.226
47DAP/reference0.928080.145
52DAP/reference1.319520.542
57DAP/reference0.872270.136

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.12780.966
26DAP/20DAP0.688640.512
34DAP/26DAP1.522780.819
51DAP/34DAPN/AN/A
52DAP/51DAP1.148770.733
53DAP/52DAP1.246780.552
55DAP/53DAP1.37940.693
57DAP/55DAP0.915070.754
62DAP/57DAP0.826760.466
68DAP/62DAP1.391570.035
68DAP/14DAP1.400890.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.823520.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.068190.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.118760.742
1-1-2/M821.092851
12-2/M820.897580.955
12-4/M820.711460.619
1-3/M822.30770.26
2-1-1/M821.017111
2-1/M820.680870.519
2-6/M821.657510.329
3-2/M821.32546
4-1-1/M821.467141
4-1/M820.93605
4-3-2/M821.55263
4-3/M822.470750.268
5-3/M820.527530.419
6-2/M820.266950.481
6-3/M821.049081
7-1/M820.95079
7-2/M821.08631
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.237050.737
IL1-4/WTpooled0.92663
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.246630.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.177570.914
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.137321
DC3000/delta hrp 24h1.084130.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.197841
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.956391
Var 0h0.541710.146
Var 12h I row2-row11.060211
Var 12h NI row2-row10.880010.394
Var 36h I row2-row11.118971
Var 36h NI row2-row10.993311
Var 60h I row2-row10.810030.292
Var 60h NI row2-row10.877760.306
Time course 0hI-0hNI1.240960.719
Time course 12hI-12hNI1.374530.096
Time course 36hI-36hNI1.892540.008
Time course 60hI-60hNI1.623630.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.095391
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.990261

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.102370.093
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.181820.181