Expression of 1-1-7.3.17.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98491 | 0.858 |
27DAP/17DAP | 1.21214 | 0.809 |
39DAP/27DAP | 1.09283 | 0.974 |
41DAP/39DAP | 1.58674 | 0.408 |
42DAP/41DAP | 1.32756 | 0.745 |
43DAP/42DAP | 1.00557 | 0.937 |
47DAP/43DAP | 1.13344 | 0.576 |
52DAP/47DAP | 1.17396 | 0.67 |
57DAP/52DAP | 0.97169 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9576 | 0.352 |
17DAP/reference | 1.02083 | 0.717 |
27DAP/reference | 1.03101 | 0.599 |
39DAP/reference | 1.05417 | 0.101 |
41DAP/reference | 1.09731 | 0.393 |
42DAP/reference | 0.99204 | 0.501 |
43DAP/reference | 0.94804 | 0.538 |
47DAP/reference | 0.95962 | 0.148 |
52DAP/reference | 0.91819 | 0.258 |
57DAP/reference | 0.87747 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97745 | 0.679 |
27DAP/17DAP | 0.92525 | 0.39 |
39DAP/27DAP | 1.05501 | 0.575 |
41DAP/39DAP | 1.11072 | 0.469 |
42DAP/41DAP | 0.97468 | 0.757 |
43DAP/42DAP | 0.9486 | 0.256 |
47DAP/43DAP | 1.02149 | 0.837 |
52DAP/47DAP | 1.0468 | 0.816 |
57DAP/52DAP | 1.01916 | 1 |
57DAP/7DAP | 1.1477 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77551 | 0.1 |
17DAP/reference | 0.76574 | 0.011 |
27DAP/reference | 0.70893 | 0.01 |
39DAP/reference | 0.85814 | 0.015 |
41DAP/reference | 0.84221 | 0.023 |
42DAP/reference | 0.82214 | 0.017 |
43DAP/reference | 0.83609 | 0.069 |
47DAP/reference | 0.81157 | 0.027 |
52DAP/reference | 0.8005 | 0.014 |
57DAP/reference | 0.81628 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02142 | 0.758 |
17DAP/reference | 0.98474 | 0.659 |
27DAP/reference | 0.82468 | 0.067 |
39DAP/reference | 0.93687 | 0.339 |
41DAP/reference | 0.80418 | 0.037 |
42DAP/reference | 0.83093 | 0.046 |
43DAP/reference | 0.92748 | 0.269 |
47DAP/reference | 0.8402 | 0.079 |
52DAP/reference | 0.95543 | 0.111 |
57DAP/reference | 1.06523 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81859 | 0.041 |
17DAP/reference | 0.92023 | 0.444 |
27DAP/reference | 0.75728 | 0.031 |
39DAP/reference | 0.74969 | 0.016 |
41DAP/reference | 0.84077 | 0.043 |
42DAP/reference | 0.7411 | 0.036 |
43DAP/reference | 0.76315 | 0.037 |
47DAP/reference | 0.92203 | 0.278 |
52DAP/reference | 0.77097 | 0.177 |
57DAP/reference | 0.59263 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97073 | 1 |
26DAP/20DAP | 0.93956 | 0.512 |
34DAP/26DAP | 1.03551 | 1 |
51DAP/34DAP | 0.98663 | 0.883 |
52DAP/51DAP | 0.96173 | 1 |
53DAP/52DAP | 1.03344 | 0.935 |
55DAP/53DAP | 1.01991 | 1 |
57DAP/55DAP | 0.93452 | 0.677 |
62DAP/57DAP | 0.96903 | 0.994 |
68DAP/62DAP | 1.02707 | 1 |
68DAP/14DAP | 0.95787 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98738 | 0.665 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.972 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.96131 | |
Ripe Pepper/Ripe Tomato | 1.31172 | 1 |
Mature Eggplant/Ripe Tomato | 0.38385 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.8417 | 0.841 |
1-1-2/M82 | 0.8412 | 1 |
12-2/M82 | 1.10204 | 1 |
12-4/M82 | 0.85502 | 1 |
1-3/M82 | 0.9285 | 0.378 |
2-1-1/M82 | 1.11694 | 0.689 |
2-1/M82 | 0.90465 | 0.318 |
2-6/M82 | 1.02801 | 1 |
3-2/M82 | 0.75205 | 1 |
4-1-1/M82 | 0.89871 | 1 |
4-1/M82 | 0.86669 | 1 |
4-3-2/M82 | 0.60485 | 0.698 |
4-3/M82 | 0.95255 | 1 |
5-3/M82 | 0.95652 | 1 |
6-2/M82 | 0.82293 | 0.497 |
6-3/M82 | 1.0696 | 1 |
7-1/M82 | 0.93713 | 0.509 |
7-2/M82 | 1.11543 | 1 |
9-3-2/M82 | 0.53219 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01101 | 0.493 |
IL2-6/WTpooled | 1.03969 | 0.788 |
IL7-5/WTpooled | 0.82399 | 1 |
IL7-3/WTpooled | 1.22752 | 1 |
IL12-4/WTpooled | 0.9808 | 1 |
IL1-4/WTpooled | 1.2494 | 1 |
WT/WTpooled | 0.95847 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0165 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02406 | 0.921 |
DC3000/delta hrp 6h | 1.00773 | 0.95 |
DC3000/delta hrp 12h | 1.09258 | 1 |
DC3000/delta hrp 24h | 1.02186 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06173 | 0.515 |
DC3000 delta B/DC3000 delta AB | 0.99246 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08041 | 1 |
Exp 36h | 1.43469 | 1 |
Exp 60h | 1.11921 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9808 | 1 |
Var 0h | 1.03389 | 1 |
Var 12h I row2-row1 | 1.07111 | 0.235 |
Var 12h NI row2-row1 | 0.9914 | 1 |
Var 36h I row2-row1 | 0.79026 | 0.575 |
Var 36h NI row2-row1 | 0.90314 | 0.522 |
Var 60h I row2-row1 | 1.2697 | 0.562 |
Var 60h NI row2-row1 | 1.22644 | 0.904 |
Time course 0hI-0hNI | 1.08827 | 0.852 |
Time course 12hI-12hNI | 1.04077 | 0.785 |
Time course 36hI-36hNI | 0.95764 | 0.373 |
Time course 60hI-60hNI | 1.12109 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81468 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 1.3972 | 1 |
transgenic ySAMdc/azygous control (red) | 0.85975 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.22544 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.78689 | 0.105 |
Manapal/WT (break) | 0.84647 | 1 |
Manapal/WT (red) | 1.18569 | 0.413 |
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