Expression of 1-1-7.3.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.21740.303
27DAP/17DAP1.333460.769
39DAP/27DAP0.978990.733
41DAP/39DAP1.069861
42DAP/41DAP1.179670.786
43DAP/42DAP0.996720.932
47DAP/43DAP0.80220.41
52DAP/47DAP0.912890.742
57DAP/52DAP1.185530.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.673740.033
17DAP/reference1.588570.092
27DAP/reference2.388780.008
39DAP/reference2.268310.016
41DAP/reference1.663290.038
42DAP/reference3.174930.001
43DAP/reference3.844890.006
47DAP/reference4.916910.001
52DAP/reference1.974320.01
57DAP/reference1.942850.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.032111
27DAP/17DAP0.924660.854
39DAP/27DAP1.241230.526
41DAP/39DAP0.935260.781
42DAP/41DAP1.2780.193
43DAP/42DAP0.979460.854
47DAP/43DAP0.928570.617
52DAP/47DAP1.531740.122
57DAP/52DAP1.564230.123
57DAP/7DAP1.551581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.804130.108
17DAP/reference1.268610.02
27DAP/reference1.150910.026
39DAP/reference1.76540.006
41DAP/reference1.9340.01
42DAP/reference2.491480.006
43DAP/reference3.059490.006
47DAP/reference3.853720.014
52DAP/reference2.542360.007
57DAP/reference2.738340.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.373780.006
17DAP/reference2.079440.008
27DAP/reference3.046580.012
39DAP/reference2.724470.011
41DAP/reference3.584820.005
42DAP/reference3.198150.007
43DAP/reference1.493590.605
47DAP/reference2.39290.008
52DAP/reference2.22040.006
57DAP/reference1.182311

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.379240.032
17DAP/reference0.932530.452
27DAP/reference0.946880.376
39DAP/reference1.375090.015
41DAP/reference0.94570.417
42DAP/reference1.606670.08
43DAP/reference2.905420.051
47DAP/reference3.83850.005
52DAP/reference2.325120.033
57DAP/reference5.476030.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.100130.966
26DAP/20DAP2.247870.654
34DAP/26DAP1.899430.819
51DAP/34DAP1.478990.706
52DAP/51DAP3.199710.051
53DAP/52DAP1.056040.935
55DAP/53DAP1.411630.103
57DAP/55DAP0.630380.035
62DAP/57DAP0.89990.681
68DAP/62DAP1.127710.8
68DAP/14DAP0.815190.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.5510.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.167920.075
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.822620.125
Ripe Pepper/Ripe Tomato0.223350.224
Mature Eggplant/Ripe Tomato0.133260.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93450.944
1-1-2/M821.177081
12-2/M820.956160.955
12-4/M820.98703
1-3/M821.211261
2-1-1/M820.849130.465
2-1/M820.899060.74
2-6/M820.952441
3-2/M821.14347
4-1-1/M820.918071
4-1/M820.87305
4-3-2/M820.62709
4-3/M820.913760.72
5-3/M821.01741
6-2/M820.94571
6-3/M820.999441
7-1/M820.887891
7-2/M820.93170.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.104080.493
IL2-6/WTpooled0.856461
IL7-5/WTpooled1.040451
IL7-3/WTpooled1.180521
IL12-4/WTpooled1.277830.673
IL1-4/WTpooled0.895650.699
WT/WTpooled1.032871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.992171

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02041
DC3000/delta hrp 6h0.901990.95
DC3000/delta hrp 12h0.980671
DC3000/delta hrp 24h0.80570.076

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.13519
DC3000 delta B/DC3000 delta AB1.065280.55

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.072851
Exp 36h1.153420.693
Exp 60h1.076980.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.92991
Var 0h1.185790.98
Var 12h I row2-row10.797450.418
Var 12h NI row2-row10.900730.713
Var 36h I row2-row10.88750.805
Var 36h NI row2-row11.024431
Var 60h I row2-row10.97535
Var 60h NI row2-row10.687450.977
Time course 0hI-0hNI0.991591
Time course 12hI-12hNI0.95450.506
Time course 36hI-36hNI0.883710.166
Time course 60hI-60hNI0.672280.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.036940.863
transgenic ySAMdc/azygous control (breaker)0.652110.15
transgenic ySAMdc/azygous control (red)0.823641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.177120.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.828980.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.997931
Manapal/WT (break)0.960611
Manapal/WT (red)1.28920.413