Expression of 1-1-7.3.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.2174 | 0.303 |
27DAP/17DAP | 1.33346 | 0.769 |
39DAP/27DAP | 0.97899 | 0.733 |
41DAP/39DAP | 1.06986 | 1 |
42DAP/41DAP | 1.17967 | 0.786 |
43DAP/42DAP | 0.99672 | 0.932 |
47DAP/43DAP | 0.8022 | 0.41 |
52DAP/47DAP | 0.91289 | 0.742 |
57DAP/52DAP | 1.18553 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67374 | 0.033 |
17DAP/reference | 1.58857 | 0.092 |
27DAP/reference | 2.38878 | 0.008 |
39DAP/reference | 2.26831 | 0.016 |
41DAP/reference | 1.66329 | 0.038 |
42DAP/reference | 3.17493 | 0.001 |
43DAP/reference | 3.84489 | 0.006 |
47DAP/reference | 4.91691 | 0.001 |
52DAP/reference | 1.97432 | 0.01 |
57DAP/reference | 1.94285 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03211 | 1 |
27DAP/17DAP | 0.92466 | 0.854 |
39DAP/27DAP | 1.24123 | 0.526 |
41DAP/39DAP | 0.93526 | 0.781 |
42DAP/41DAP | 1.278 | 0.193 |
43DAP/42DAP | 0.97946 | 0.854 |
47DAP/43DAP | 0.92857 | 0.617 |
52DAP/47DAP | 1.53174 | 0.122 |
57DAP/52DAP | 1.56423 | 0.123 |
57DAP/7DAP | 1.55158 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80413 | 0.108 |
17DAP/reference | 1.26861 | 0.02 |
27DAP/reference | 1.15091 | 0.026 |
39DAP/reference | 1.7654 | 0.006 |
41DAP/reference | 1.934 | 0.01 |
42DAP/reference | 2.49148 | 0.006 |
43DAP/reference | 3.05949 | 0.006 |
47DAP/reference | 3.85372 | 0.014 |
52DAP/reference | 2.54236 | 0.007 |
57DAP/reference | 2.73834 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.37378 | 0.006 |
17DAP/reference | 2.07944 | 0.008 |
27DAP/reference | 3.04658 | 0.012 |
39DAP/reference | 2.72447 | 0.011 |
41DAP/reference | 3.58482 | 0.005 |
42DAP/reference | 3.19815 | 0.007 |
43DAP/reference | 1.49359 | 0.605 |
47DAP/reference | 2.3929 | 0.008 |
52DAP/reference | 2.2204 | 0.006 |
57DAP/reference | 1.18231 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.37924 | 0.032 |
17DAP/reference | 0.93253 | 0.452 |
27DAP/reference | 0.94688 | 0.376 |
39DAP/reference | 1.37509 | 0.015 |
41DAP/reference | 0.9457 | 0.417 |
42DAP/reference | 1.60667 | 0.08 |
43DAP/reference | 2.90542 | 0.051 |
47DAP/reference | 3.8385 | 0.005 |
52DAP/reference | 2.32512 | 0.033 |
57DAP/reference | 5.47603 | 0.014 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10013 | 0.966 |
26DAP/20DAP | 2.24787 | 0.654 |
34DAP/26DAP | 1.89943 | 0.819 |
51DAP/34DAP | 1.47899 | 0.706 |
52DAP/51DAP | 3.19971 | 0.051 |
53DAP/52DAP | 1.05604 | 0.935 |
55DAP/53DAP | 1.41163 | 0.103 |
57DAP/55DAP | 0.63038 | 0.035 |
62DAP/57DAP | 0.8999 | 0.681 |
68DAP/62DAP | 1.12771 | 0.8 |
68DAP/14DAP | 0.81519 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.551 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.16792 | 0.075 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.82262 | 0.125 |
Ripe Pepper/Ripe Tomato | 0.22335 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13326 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9345 | 0.944 |
1-1-2/M82 | 1.17708 | 1 |
12-2/M82 | 0.95616 | 0.955 |
12-4/M82 | 0.98703 | |
1-3/M82 | 1.21126 | 1 |
2-1-1/M82 | 0.84913 | 0.465 |
2-1/M82 | 0.89906 | 0.74 |
2-6/M82 | 0.95244 | 1 |
3-2/M82 | 1.14347 | |
4-1-1/M82 | 0.91807 | 1 |
4-1/M82 | 0.87305 | |
4-3-2/M82 | 0.62709 | |
4-3/M82 | 0.91376 | 0.72 |
5-3/M82 | 1.0174 | 1 |
6-2/M82 | 0.9457 | 1 |
6-3/M82 | 0.99944 | 1 |
7-1/M82 | 0.88789 | 1 |
7-2/M82 | 0.9317 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10408 | 0.493 |
IL2-6/WTpooled | 0.85646 | 1 |
IL7-5/WTpooled | 1.04045 | 1 |
IL7-3/WTpooled | 1.18052 | 1 |
IL12-4/WTpooled | 1.27783 | 0.673 |
IL1-4/WTpooled | 0.89565 | 0.699 |
WT/WTpooled | 1.03287 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99217 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0204 | 1 |
DC3000/delta hrp 6h | 0.90199 | 0.95 |
DC3000/delta hrp 12h | 0.98067 | 1 |
DC3000/delta hrp 24h | 0.8057 | 0.076 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13519 | |
DC3000 delta B/DC3000 delta AB | 1.06528 | 0.55 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07285 | 1 |
Exp 36h | 1.15342 | 0.693 |
Exp 60h | 1.07698 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9299 | 1 |
Var 0h | 1.18579 | 0.98 |
Var 12h I row2-row1 | 0.79745 | 0.418 |
Var 12h NI row2-row1 | 0.90073 | 0.713 |
Var 36h I row2-row1 | 0.8875 | 0.805 |
Var 36h NI row2-row1 | 1.02443 | 1 |
Var 60h I row2-row1 | 0.97535 | |
Var 60h NI row2-row1 | 0.68745 | 0.977 |
Time course 0hI-0hNI | 0.99159 | 1 |
Time course 12hI-12hNI | 0.9545 | 0.506 |
Time course 36hI-36hNI | 0.88371 | 0.166 |
Time course 60hI-60hNI | 0.67228 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03694 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.65211 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.82364 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17712 | 0.047 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82898 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99793 | 1 |
Manapal/WT (break) | 0.96061 | 1 |
Manapal/WT (red) | 1.2892 | 0.413 |
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