Expression of 1-1-7.3.19.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89537 | 0.511 |
27DAP/17DAP | 1.00806 | 1 |
39DAP/27DAP | 1.69333 | 0.095 |
41DAP/39DAP | 0.834 | 0.389 |
42DAP/41DAP | 1.1479 | 0.908 |
43DAP/42DAP | 1.05787 | 0.937 |
47DAP/43DAP | 1.13346 | 0.873 |
52DAP/47DAP | 1.05289 | 0.983 |
57DAP/52DAP | 0.88765 | 0.889 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.75069 | 0.009 |
17DAP/reference | 1.40018 | 0.011 |
27DAP/reference | 1.45891 | 0.009 |
39DAP/reference | 1.17881 | 0.117 |
41DAP/reference | 1.59697 | 0.015 |
42DAP/reference | 1.69867 | 0.001 |
43DAP/reference | 1.13378 | 0.382 |
47DAP/reference | 1.6213 | 0.001 |
52DAP/reference | 1.69959 | 0.023 |
57DAP/reference | 1.19618 | 0.344 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06445 | 0.431 |
27DAP/17DAP | 0.93989 | 0.724 |
39DAP/27DAP | 0.84959 | 0.051 |
41DAP/39DAP | 0.98397 | 1 |
42DAP/41DAP | 1.05999 | 0.559 |
43DAP/42DAP | 0.95929 | 0.28 |
47DAP/43DAP | 0.91463 | 0.428 |
52DAP/47DAP | 1.06383 | 0.766 |
57DAP/52DAP | 1.12217 | 0.407 |
57DAP/7DAP | 1.07077 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18384 | 0.213 |
17DAP/reference | 1.04121 | 0.054 |
27DAP/reference | 1.09771 | 0.026 |
39DAP/reference | 1.0949 | 0.01 |
41DAP/reference | 1.26334 | 0.018 |
42DAP/reference | 1.27633 | 0.006 |
43DAP/reference | 1.16214 | 0.07 |
47DAP/reference | 1.3849 | 0.045 |
52DAP/reference | 1.21751 | 0.007 |
57DAP/reference | 1.17255 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5951 | 0.114 |
17DAP/reference | 1.88241 | 0.009 |
27DAP/reference | 1.87661 | 0.041 |
39DAP/reference | 1.4946 | 0.093 |
41DAP/reference | 2.21342 | 0.009 |
42DAP/reference | 2.24998 | 0.031 |
43DAP/reference | 1.58104 | 0.117 |
47DAP/reference | 1.53112 | 0.008 |
52DAP/reference | 1.82122 | 0.006 |
57DAP/reference | 1.55865 | 0.015 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19575 | 0.057 |
17DAP/reference | 1.24073 | 0.163 |
27DAP/reference | 1.15787 | 0.032 |
39DAP/reference | 1.21289 | 0.006 |
41DAP/reference | 1.19752 | 0.134 |
42DAP/reference | 1.2784 | 0.18 |
43DAP/reference | 1.56495 | 0.059 |
47DAP/reference | 1.42353 | 0.034 |
52DAP/reference | 1.16498 | 0.335 |
57DAP/reference | 1.55547 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99034 | 1 |
26DAP/20DAP | 1.41914 | 0.347 |
34DAP/26DAP | 1.19993 | 1 |
51DAP/34DAP | 1.03626 | 0.901 |
52DAP/51DAP | 1.14878 | 0.377 |
53DAP/52DAP | 1.11675 | 0.398 |
55DAP/53DAP | 0.99856 | 0.917 |
57DAP/55DAP | 0.88541 | 0.468 |
62DAP/57DAP | 1.10996 | 1 |
68DAP/62DAP | 0.76903 | 0.543 |
68DAP/14DAP | 0.90117 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78786 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14441 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.65291 | 0.053 |
Immature Eggplant/Mature Eggplant | 1.2543 | 0.205 |
Ripe Pepper/Ripe Tomato | 0.64305 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.12377 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96322 | 0.944 |
1-1-2/M82 | 0.9638 | 0.958 |
12-2/M82 | 0.98842 | 1 |
12-4/M82 | 1.0721 | 1 |
1-3/M82 | 1.09613 | 0.479 |
2-1-1/M82 | 0.94356 | 0.784 |
2-1/M82 | 0.96761 | 0.519 |
2-6/M82 | 0.99054 | 1 |
3-2/M82 | 1.20291 | |
4-1-1/M82 | 1.18816 | 1 |
4-1/M82 | 1.00258 | 1 |
4-3-2/M82 | 1.13565 | 1 |
4-3/M82 | 0.94274 | 0.72 |
5-3/M82 | 0.96924 | 1 |
6-2/M82 | 1.01484 | 1 |
6-3/M82 | 1.05063 | 1 |
7-1/M82 | 1.02721 | 1 |
7-2/M82 | 0.9545 | 0.796 |
9-3-2/M82 | 1.15169 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.44574 | |
IL2-6/WTpooled | 1.32665 | 0.395 |
IL7-5/WTpooled | 0.97633 | |
IL7-3/WTpooled | 1.48935 | 0.362 |
IL12-4/WTpooled | 1.26684 | 0.785 |
IL1-4/WTpooled | 0.92548 | 0.394 |
WT/WTpooled | 1.02932 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99797 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03365 | 0.921 |
DC3000/delta hrp 6h | 1.04048 | 0.95 |
DC3000/delta hrp 12h | 1.17553 | 1 |
DC3000/delta hrp 24h | 1.05629 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10335 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.03903 | 0.614 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82287 | 1 |
Exp 36h | 1.21562 | 1 |
Exp 60h | 1.06687 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99974 | 1 |
Var 0h | 0.94454 | 1 |
Var 12h I row2-row1 | 0.97583 | 0.627 |
Var 12h NI row2-row1 | 1.11624 | 0.34 |
Var 36h I row2-row1 | 0.92037 | 0.575 |
Var 36h NI row2-row1 | 1.02625 | 1 |
Var 60h I row2-row1 | 1.10095 | 1 |
Var 60h NI row2-row1 | 0.89813 | 0.866 |
Time course 0hI-0hNI | 0.89531 | 0.138 |
Time course 12hI-12hNI | 0.9769 | 0.864 |
Time course 36hI-36hNI | 1.04799 | 0.975 |
Time course 60hI-60hNI | 1.12369 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90966 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.11669 | 1 |
transgenic ySAMdc/azygous control (red) | 1.14612 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89216 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96509 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.99805 | 1 |
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