Expression of 1-1-7.3.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.895370.511
27DAP/17DAP1.008061
39DAP/27DAP1.693330.095
41DAP/39DAP0.8340.389
42DAP/41DAP1.14790.908
43DAP/42DAP1.057870.937
47DAP/43DAP1.133460.873
52DAP/47DAP1.052890.983
57DAP/52DAP0.887650.889

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.750690.009
17DAP/reference1.400180.011
27DAP/reference1.458910.009
39DAP/reference1.178810.117
41DAP/reference1.596970.015
42DAP/reference1.698670.001
43DAP/reference1.133780.382
47DAP/reference1.62130.001
52DAP/reference1.699590.023
57DAP/reference1.196180.344

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.064450.431
27DAP/17DAP0.939890.724
39DAP/27DAP0.849590.051
41DAP/39DAP0.983971
42DAP/41DAP1.059990.559
43DAP/42DAP0.959290.28
47DAP/43DAP0.914630.428
52DAP/47DAP1.063830.766
57DAP/52DAP1.122170.407
57DAP/7DAP1.070771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183840.213
17DAP/reference1.041210.054
27DAP/reference1.097710.026
39DAP/reference1.09490.01
41DAP/reference1.263340.018
42DAP/reference1.276330.006
43DAP/reference1.162140.07
47DAP/reference1.38490.045
52DAP/reference1.217510.007
57DAP/reference1.172550.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.59510.114
17DAP/reference1.882410.009
27DAP/reference1.876610.041
39DAP/reference1.49460.093
41DAP/reference2.213420.009
42DAP/reference2.249980.031
43DAP/reference1.581040.117
47DAP/reference1.531120.008
52DAP/reference1.821220.006
57DAP/reference1.558650.015

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.195750.057
17DAP/reference1.240730.163
27DAP/reference1.157870.032
39DAP/reference1.212890.006
41DAP/reference1.197520.134
42DAP/reference1.27840.18
43DAP/reference1.564950.059
47DAP/reference1.423530.034
52DAP/reference1.164980.335
57DAP/reference1.555470.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.990341
26DAP/20DAP1.419140.347
34DAP/26DAP1.199931
51DAP/34DAP1.036260.901
52DAP/51DAP1.148780.377
53DAP/52DAP1.116750.398
55DAP/53DAP0.998560.917
57DAP/55DAP0.885410.468
62DAP/57DAP1.109961
68DAP/62DAP0.769030.543
68DAP/14DAP0.901171

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.787860.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.144410.287
Mature Green Tomato/Ripe Tomato1.652910.053
Immature Eggplant/Mature Eggplant1.25430.205
Ripe Pepper/Ripe Tomato0.643050.224
Mature Eggplant/Ripe Tomato1.123771

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.963220.944
1-1-2/M820.96380.958
12-2/M820.988421
12-4/M821.07211
1-3/M821.096130.479
2-1-1/M820.943560.784
2-1/M820.967610.519
2-6/M820.990541
3-2/M821.20291
4-1-1/M821.188161
4-1/M821.002581
4-3-2/M821.135651
4-3/M820.942740.72
5-3/M820.969241
6-2/M821.014841
6-3/M821.050631
7-1/M821.027211
7-2/M820.95450.796
9-3-2/M821.151691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.44574
IL2-6/WTpooled1.326650.395
IL7-5/WTpooled0.97633
IL7-3/WTpooled1.489350.362
IL12-4/WTpooled1.266840.785
IL1-4/WTpooled0.925480.394
WT/WTpooled1.029321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.997971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033650.921
DC3000/delta hrp 6h1.040480.95
DC3000/delta hrp 12h1.175531
DC3000/delta hrp 24h1.056290.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.103350.384
DC3000 delta B/DC3000 delta AB1.039030.614

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.822871
Exp 36h1.215621
Exp 60h1.066871

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999741
Var 0h0.944541
Var 12h I row2-row10.975830.627
Var 12h NI row2-row11.116240.34
Var 36h I row2-row10.920370.575
Var 36h NI row2-row11.026251
Var 60h I row2-row11.100951
Var 60h NI row2-row10.898130.866
Time course 0hI-0hNI0.895310.138
Time course 12hI-12hNI0.97690.864
Time course 36hI-36hNI1.047990.975
Time course 60hI-60hNI1.123690.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.909660.3
transgenic ySAMdc/azygous control (breaker)1.116691
transgenic ySAMdc/azygous control (red)1.146120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.892160.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.965090.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.998051