Expression of 1-1-7.3.2.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.605360.033
27DAP/17DAP0.704580.084
39DAP/27DAP2.083190.159
41DAP/39DAP0.714110.164
42DAP/41DAP1.150181
43DAP/42DAP1.228221
47DAP/43DAP0.528230.058
52DAP/47DAP1.455170.406
57DAP/52DAP1.30530.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.003490.806
17DAP/reference0.991420.819
27DAP/reference0.914820.152
39DAP/reference0.954840.292
41DAP/reference0.975390.542
42DAP/reference1.021850.756
43DAP/reference1.070050.287
47DAP/reference1.0111
52DAP/reference0.986780.546
57DAP/reference0.976980.358

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.797490.051
27DAP/17DAP1.149570.527
39DAP/27DAP0.845150.274
41DAP/39DAP1.138450.807
42DAP/41DAP0.903810.387
43DAP/42DAP1.214930.03
47DAP/43DAP1.035520.88
52DAP/47DAP0.854070.42
57DAP/52DAP0.783860.145
57DAP/7DAP0.640961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.722370.035
17DAP/reference1.256450.011
27DAP/reference1.373420.026
39DAP/reference1.330330.013
41DAP/reference1.48920.009
42DAP/reference1.840.006
43DAP/reference2.111410.006
47DAP/reference1.373470.045
52DAP/reference2.017610.007
57DAP/reference1.43380.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108630.284
17DAP/reference1.066940.426
27DAP/reference1.186050.071
39DAP/reference1.085210.602
41DAP/reference1.104690.255
42DAP/reference1.033081
43DAP/reference0.954520.486
47DAP/reference0.966060.4
52DAP/reference1.047280.194
57DAP/reference0.959050.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.455690.026
17DAP/reference1.108610.298
27DAP/reference1.225360.057
39DAP/reference1.322690.033
41DAP/reference1.269150.018
42DAP/reference1.425730.009
43DAP/reference1.38620.019
47DAP/reference0.919060.08
52DAP/reference0.951320.433
57DAP/reference1.176280.187

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.991071
26DAP/20DAP1.689370.243
34DAP/26DAP1.004211
51DAP/34DAP1.21690.115
52DAP/51DAP0.883521
53DAP/52DAP0.952730.797
55DAP/53DAP0.762930.111
57DAP/55DAP1.440270.125
62DAP/57DAP1.053541
68DAP/62DAP0.951510.747
68DAP/14DAP0.927121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.253280.099

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.745250.208
Mature Green Tomato/Ripe Tomato0.672170.017
Immature Eggplant/Mature Eggplant1.177210.205
Ripe Pepper/Ripe Tomato1.509950.256
Mature Eggplant/Ripe Tomato1.525010.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.934910.934
1-1-2/M821.585291
12-2/M821.19721
12-4/M821.294481
1-3/M822.289390.255
2-1-1/M821.019611
2-1/M820.865151
2-6/M821.121610.345
3-2/M821.03880.717
4-1-1/M821.051661
4-1/M821.421791
4-3-2/M821.695030.284
4-3/M821.185561
5-3/M821.056271
6-2/M821.561271
6-3/M821.148591
7-1/M821.037791
7-2/M821.589710.324
9-3-2/M821.639760.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.866971
IL2-6/WTpooled0.69771
IL7-5/WTpooled2.88031
IL7-3/WTpooled0.910160.31
IL12-4/WTpooled1.016551
IL1-4/WTpooled1.031231
WT/WTpooled1.016731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.971981

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064070.846
DC3000/delta hrp 6h1.01681
DC3000/delta hrp 12h0.961911
DC3000/delta hrp 24h1.034850.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.027520.598
DC3000 delta B/DC3000 delta AB0.896410.261

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.05371
Exp 36h1.114111
Exp 60h1.19250.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004531
Var 0h0.623490.332
Var 12h I row2-row10.911530.77
Var 12h NI row2-row11.191020.649
Var 36h I row2-row11.0820.908
Var 36h NI row2-row10.995860.852
Var 60h I row2-row10.830570.582
Var 60h NI row2-row10.83970.63
Time course 0hI-0hNI1.039210.852
Time course 12hI-12hNI0.99130.968
Time course 36hI-36hNI1.12440.089
Time course 60hI-60hNI1.031071

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.037170.408
transgenic ySAMdc/azygous control (breaker)0.960781
transgenic ySAMdc/azygous control (red)1.096070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.172270.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.789340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.967811
Manapal/WT (break)0.840220.333
Manapal/WT (red)1.047271