Expression of 1-1-7.3.2.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87606 | 0.496 |
27DAP/17DAP | 1.0277 | 1 |
39DAP/27DAP | 1.57527 | 0.358 |
41DAP/39DAP | 0.94203 | 0.724 |
42DAP/41DAP | 1.05684 | 0.941 |
43DAP/42DAP | 0.96396 | 0.898 |
47DAP/43DAP | 1.19942 | 0.595 |
52DAP/47DAP | 1.08147 | 0.949 |
57DAP/52DAP | 1.2331 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18507 | 0.055 |
17DAP/reference | 1.07631 | 0.154 |
27DAP/reference | 1.0786 | 0.322 |
39DAP/reference | 0.96918 | 0.587 |
41DAP/reference | 1.03452 | 0.587 |
42DAP/reference | 0.92164 | 0.046 |
43DAP/reference | 1.10334 | 0.126 |
47DAP/reference | 0.87078 | 0.003 |
52DAP/reference | 0.85813 | 0.031 |
57DAP/reference | 0.8785 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77168 | 0.164 |
27DAP/17DAP | 1.18665 | 0.55 |
39DAP/27DAP | 1.19026 | 0.28 |
41DAP/39DAP | 1.04267 | 0.876 |
42DAP/41DAP | 0.98433 | 0.777 |
43DAP/42DAP | 1.06492 | 0.554 |
47DAP/43DAP | 1.09327 | 0.475 |
52DAP/47DAP | 0.90674 | 0.546 |
57DAP/52DAP | 1.13582 | 0.722 |
57DAP/7DAP | 1.23734 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93933 | 0.361 |
17DAP/reference | 0.75472 | 0.015 |
27DAP/reference | 0.96079 | 0.375 |
39DAP/reference | 0.78813 | 0.016 |
41DAP/reference | 0.87461 | 0.073 |
42DAP/reference | 0.7861 | 0.024 |
43DAP/reference | 0.74494 | 0.023 |
47DAP/reference | 0.94276 | 0.383 |
52DAP/reference | 0.87565 | 0.106 |
57DAP/reference | 1.07697 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13733 | 0.19 |
17DAP/reference | 1.01193 | 0.904 |
27DAP/reference | 1.05109 | 0.67 |
39DAP/reference | 0.94974 | 0.314 |
41DAP/reference | 0.91919 | 0.194 |
42DAP/reference | 0.80176 | 0.014 |
43DAP/reference | 0.91074 | 0.25 |
47DAP/reference | 0.90721 | 0.054 |
52DAP/reference | 0.93818 | 0.187 |
57DAP/reference | 1.02247 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01127 | 1 |
17DAP/reference | 0.97052 | 0.601 |
27DAP/reference | 0.80068 | 0.055 |
39DAP/reference | 0.81094 | 0.022 |
41DAP/reference | 0.94546 | 0.417 |
42DAP/reference | 0.85625 | 0.071 |
43DAP/reference | 0.98168 | 0.639 |
47DAP/reference | 0.94727 | 0.325 |
52DAP/reference | 0.89724 | 0.169 |
57DAP/reference | 0.83263 | 0.107 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04349 | 0.966 |
26DAP/20DAP | 0.68034 | 0.512 |
34DAP/26DAP | 0.31843 | |
51DAP/34DAP | 1.42751 | 0.089 |
52DAP/51DAP | 0.7775 | 1 |
53DAP/52DAP | 1.09514 | 0.768 |
55DAP/53DAP | 0.9425 | 0.698 |
57DAP/55DAP | 0.93023 | 0.684 |
62DAP/57DAP | 1.29866 | 0.678 |
68DAP/62DAP | 1.1469 | |
68DAP/14DAP | 0.89394 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9123 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81577 | 0.295 |
Mature Green Tomato/Ripe Tomato | 0.62497 | 0.031 |
Immature Eggplant/Mature Eggplant | 0.73376 | 0.064 |
Ripe Pepper/Ripe Tomato | 1.53501 | 1 |
Mature Eggplant/Ripe Tomato | 1.01745 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96434 | 0.944 |
1-1-2/M82 | 1.08749 | 1 |
12-2/M82 | 1.00115 | 1 |
12-4/M82 | 0.88656 | 1 |
1-3/M82 | 1.68676 | 0.277 |
2-1-1/M82 | 0.92937 | 0.465 |
2-1/M82 | 1.01311 | 1 |
2-6/M82 | 0.9182 | 1 |
3-2/M82 | 1.00768 | 1 |
4-1-1/M82 | 0.88129 | 0.667 |
4-1/M82 | 0.93755 | |
4-3-2/M82 | 1.21799 | 1 |
4-3/M82 | 1.10698 | 1 |
5-3/M82 | 1.10363 | 1 |
6-2/M82 | 0.93811 | 1 |
6-3/M82 | 1.15492 | 1 |
7-1/M82 | 0.96206 | 1 |
7-2/M82 | 1.0013 | 1 |
9-3-2/M82 | 1.29874 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.133 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.56455 | 0.294 |
IL12-4/WTpooled | 0.92765 | 0.581 |
IL1-4/WTpooled | 0.98904 | |
WT/WTpooled | 1.06819 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22473 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02767 | 0.921 |
DC3000/delta hrp 6h | 1.23658 | 1 |
DC3000/delta hrp 12h | 1.08538 | 1 |
DC3000/delta hrp 24h | 0.91306 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.49195 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98051 | 1 |
Exp 36h | 0.9681 | 0.943 |
Exp 60h | 0.77957 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03315 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.05921 | 0.58 |
Var 12h NI row2-row1 | 0.98685 | 1 |
Var 36h I row2-row1 | 1.19504 | 0.298 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 0.66255 | 0.439 |
Var 60h NI row2-row1 | 0.70271 | 0.69 |
Time course 0hI-0hNI | 0.98519 | 0.981 |
Time course 12hI-12hNI | 1.31431 | 0.03 |
Time course 36hI-36hNI | 1.56505 | 0.007 |
Time course 60hI-60hNI | 1.82585 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9179 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 1.03283 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00314 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99216 | 0.568 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.72771 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36659 | 0.105 |
Manapal/WT (break) | 1.0579 | 1 |
Manapal/WT (red) | 1.19291 | 0.413 |
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