Expression of 1-1-7.3.2.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.876060.496
27DAP/17DAP1.02771
39DAP/27DAP1.575270.358
41DAP/39DAP0.942030.724
42DAP/41DAP1.056840.941
43DAP/42DAP0.963960.898
47DAP/43DAP1.199420.595
52DAP/47DAP1.081470.949
57DAP/52DAP1.23310.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.185070.055
17DAP/reference1.076310.154
27DAP/reference1.07860.322
39DAP/reference0.969180.587
41DAP/reference1.034520.587
42DAP/reference0.921640.046
43DAP/reference1.103340.126
47DAP/reference0.870780.003
52DAP/reference0.858130.031
57DAP/reference0.87850.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.771680.164
27DAP/17DAP1.186650.55
39DAP/27DAP1.190260.28
41DAP/39DAP1.042670.876
42DAP/41DAP0.984330.777
43DAP/42DAP1.064920.554
47DAP/43DAP1.093270.475
52DAP/47DAP0.906740.546
57DAP/52DAP1.135820.722
57DAP/7DAP1.237341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.939330.361
17DAP/reference0.754720.015
27DAP/reference0.960790.375
39DAP/reference0.788130.016
41DAP/reference0.874610.073
42DAP/reference0.78610.024
43DAP/reference0.744940.023
47DAP/reference0.942760.383
52DAP/reference0.875650.106
57DAP/reference1.076970.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137330.19
17DAP/reference1.011930.904
27DAP/reference1.051090.67
39DAP/reference0.949740.314
41DAP/reference0.919190.194
42DAP/reference0.801760.014
43DAP/reference0.910740.25
47DAP/reference0.907210.054
52DAP/reference0.938180.187
57DAP/reference1.022471

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011271
17DAP/reference0.970520.601
27DAP/reference0.800680.055
39DAP/reference0.810940.022
41DAP/reference0.945460.417
42DAP/reference0.856250.071
43DAP/reference0.981680.639
47DAP/reference0.947270.325
52DAP/reference0.897240.169
57DAP/reference0.832630.107

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.043490.966
26DAP/20DAP0.680340.512
34DAP/26DAP0.31843
51DAP/34DAP1.427510.089
52DAP/51DAP0.77751
53DAP/52DAP1.095140.768
55DAP/53DAP0.94250.698
57DAP/55DAP0.930230.684
62DAP/57DAP1.298660.678
68DAP/62DAP1.1469
68DAP/14DAP0.893941

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.91230.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.815770.295
Mature Green Tomato/Ripe Tomato0.624970.031
Immature Eggplant/Mature Eggplant0.733760.064
Ripe Pepper/Ripe Tomato1.535011
Mature Eggplant/Ripe Tomato1.017451

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.964340.944
1-1-2/M821.087491
12-2/M821.001151
12-4/M820.886561
1-3/M821.686760.277
2-1-1/M820.929370.465
2-1/M821.013111
2-6/M820.91821
3-2/M821.007681
4-1-1/M820.881290.667
4-1/M820.93755
4-3-2/M821.217991
4-3/M821.106981
5-3/M821.103631
6-2/M820.938111
6-3/M821.154921
7-1/M820.962061
7-2/M821.00131
9-3-2/M821.298741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.1330.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.564550.294
IL12-4/WTpooled0.927650.581
IL1-4/WTpooled0.98904
WT/WTpooled1.068191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.224730.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027670.921
DC3000/delta hrp 6h1.236581
DC3000/delta hrp 12h1.085381
DC3000/delta hrp 24h0.913060.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.491951

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.980511
Exp 36h0.96810.943
Exp 60h0.779570.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03315
Var 0hN/AN/A
Var 12h I row2-row11.059210.58
Var 12h NI row2-row10.986851
Var 36h I row2-row11.195040.298
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.662550.439
Var 60h NI row2-row10.702710.69
Time course 0hI-0hNI0.985190.981
Time course 12hI-12hNI1.314310.03
Time course 36hI-36hNI1.565050.007
Time course 60hI-60hNI1.825850.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91790.315
transgenic ySAMdc/azygous control (breaker)1.032831
transgenic ySAMdc/azygous control (red)1.003141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.992160.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.727710.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.366590.105
Manapal/WT (break)1.05791
Manapal/WT (red)1.192910.413