Expression of 1-1-7.3.20.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114720.786
27DAP/17DAP1.594920.646
39DAP/27DAP0.940490.652
41DAP/39DAP1.112780.575
42DAP/41DAP1.034811
43DAP/42DAP1.019960.937
47DAP/43DAP0.91640.699
52DAP/47DAP1.128090.994
57DAP/52DAP1.077470.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.667480.025
17DAP/reference0.915890.448
27DAP/reference1.03831
39DAP/reference0.934230.638
41DAP/reference1.015850.963
42DAP/reference0.741970.001
43DAP/reference0.691650.058
47DAP/reference0.752850.027
52DAP/reference0.93230.475
57DAP/reference2.79714

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.445410.05
27DAP/17DAP1.013120.919
39DAP/27DAP1.023450.779
41DAP/39DAP0.832950.169
42DAP/41DAP1.241520.539
43DAP/42DAP0.614620.022
47DAP/43DAP0.880080.525
52DAP/47DAP0.85760.572
57DAP/52DAP1.603410.856
57DAP/7DAP2.72089

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.454850.057
17DAP/reference1.096441
27DAP/reference0.955410.264
39DAP/reference0.632030.011
41DAP/reference0.75990.064
42DAP/reference0.643230.035
43DAP/reference1.004020.694
47DAP/reference0.977120.671
52DAP/reference1.079820.732
57DAP/reference0.982470.513

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.766280.058
17DAP/reference0.720830.006
27DAP/reference0.893020.366
39DAP/reference0.90230.189
41DAP/reference0.808250.013
42DAP/reference1.007521
43DAP/reference1.189580.89
47DAP/reference0.882590.188
52DAP/reference0.895090.101
57DAP/reference0.686190.016

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.787890.034
17DAP/reference1.120090.746
27DAP/reference1.189580.072
39DAP/reference0.936390.147
41DAP/reference0.969730.56
42DAP/reference0.874220.108
43DAP/reference1.106690.7
47DAP/reference0.911980.174
52DAP/reference0.792750.123
57DAP/reference1.427040.187

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.130480.966
26DAP/20DAP1.292770.818
34DAP/26DAP0.954470.898
51DAP/34DAP5.258840.026
52DAP/51DAP1.009251
53DAP/52DAP3.015920.024
55DAP/53DAP1.331560.361
57DAP/55DAP0.617520.057
62DAP/57DAP0.317770.002
68DAP/62DAP1.631830.259
68DAP/14DAP4.969660.017

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.152480.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.275660.073
Mature Green Tomato/Ripe Tomato1.143261
Immature Eggplant/Mature Eggplant0.955060.808
Ripe Pepper/Ripe Tomato12.75021
Mature Eggplant/Ripe Tomato3.826730.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.07467
12-2/M82N/AN/A
12-4/M820.827040.619
1-3/M820.90303
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.930770.752
4-1-1/M82N/AN/A
4-1/M820.77105
4-3-2/M820.91525
4-3/M82N/AN/A
5-3/M821.720040.496
6-2/M820.611661
6-3/M821.444740.971
7-1/M820.91583
7-2/M821.139211
9-3-2/M820.78210.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.447640.277
IL2-6/WTpooled1.197270.531
IL7-5/WTpooled1.508350.792
IL7-3/WTpooled1.694821
IL12-4/WTpooled0.899831
IL1-4/WTpooled1.195071
WT/WTpooled0.923261

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.89626

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.112280.921
DC3000/delta hrp 6h1.034681
DC3000/delta hrp 12h1.090451
DC3000/delta hrp 24h0.823970.323

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.54691
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.118541
Exp 36h0.956110.82
Exp 60h1.074220.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968151
Var 0hN/AN/A
Var 12h I row2-row10.901920.344
Var 12h NI row2-row11.097250.649
Var 36h I row2-row11.245570.41
Var 36h NI row2-row11.001620.852
Var 60h I row2-row10.66120.293
Var 60h NI row2-row10.938091
Time course 0hI-0hNI0.971890.829
Time course 12hI-12hNI1.013821
Time course 36hI-36hNI1.159340.28
Time course 60hI-60hNI2.070460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004921
transgenic ySAMdc/azygous control (breaker)0.860920.15
transgenic ySAMdc/azygous control (red)0.96871

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.137850.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.147270.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.853450.172
Manapal/WT (break)0.805581
Manapal/WT (red)0.878560.424