Expression of 1-1-7.3.20.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08239 | 0.863 |
27DAP/17DAP | 1.19629 | 0.825 |
39DAP/27DAP | 1.03311 | 0.82 |
41DAP/39DAP | 1.43815 | 0.38 |
42DAP/41DAP | 0.98186 | 1 |
43DAP/42DAP | 1.00838 | 0.937 |
47DAP/43DAP | 1.01628 | 0.895 |
52DAP/47DAP | 1.20693 | 0.696 |
57DAP/52DAP | 1.02977 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95421 | 0.503 |
17DAP/reference | 0.78132 | 0.05 |
27DAP/reference | 1.68309 | 0.569 |
39DAP/reference | 0.81939 | |
41DAP/reference | 0.77066 | 0.434 |
42DAP/reference | 0.98085 | 0.469 |
43DAP/reference | 0.4168 | |
47DAP/reference | 0.99821 | 0.72 |
52DAP/reference | 0.83964 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98186 | 0.732 |
27DAP/17DAP | 0.99895 | 0.969 |
39DAP/27DAP | 1.03904 | 0.691 |
41DAP/39DAP | 1.03423 | 0.876 |
42DAP/41DAP | 1.00383 | 1 |
43DAP/42DAP | 0.98793 | 0.831 |
47DAP/43DAP | 0.98651 | 0.923 |
52DAP/47DAP | 0.99632 | 0.962 |
57DAP/52DAP | 1.04201 | 0.777 |
57DAP/7DAP | 1.09428 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10339 | 0.481 |
17DAP/reference | 0.95069 | 0.338 |
27DAP/reference | 0.88271 | 0.045 |
39DAP/reference | 0.78455 | 0.011 |
41DAP/reference | 0.83948 | 0.103 |
42DAP/reference | 0.66691 | 0.01 |
43DAP/reference | 0.88267 | 0.166 |
47DAP/reference | 0.96416 | 0.504 |
52DAP/reference | 0.88347 | 0.115 |
57DAP/reference | 0.98903 | 0.629 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95906 | 0.487 |
17DAP/reference | 0.91915 | 0.045 |
27DAP/reference | 0.94369 | 0.452 |
39DAP/reference | 0.89791 | 0.041 |
41DAP/reference | 0.84394 | 0.073 |
42DAP/reference | 0.95323 | |
43DAP/reference | 0.81011 | 0.068 |
47DAP/reference | 0.54983 | 0.058 |
52DAP/reference | 0.92595 | 0.04 |
57DAP/reference | 0.90581 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84585 | 0.065 |
17DAP/reference | 0.96839 | 0.579 |
27DAP/reference | 0.84081 | 0.031 |
39DAP/reference | 0.86798 | 0.029 |
41DAP/reference | 0.9978 | 0.826 |
42DAP/reference | 0.94348 | 0.445 |
43DAP/reference | 1.14088 | 0.28 |
47DAP/reference | 1.02119 | 0.61 |
52DAP/reference | 1.01989 | 0.941 |
57DAP/reference | 0.96724 | 0.366 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94443 | 1 |
26DAP/20DAP | 0.96446 | 1 |
34DAP/26DAP | 0.97873 | 0.927 |
51DAP/34DAP | 0.95081 | 0.66 |
52DAP/51DAP | 1.01844 | 0.86 |
53DAP/52DAP | 1.02419 | 1 |
55DAP/53DAP | 1.00812 | 1 |
57DAP/55DAP | 1.0072 | 0.94 |
62DAP/57DAP | 1.04341 | 1 |
68DAP/62DAP | 0.89099 | 0.314 |
68DAP/14DAP | 1.05367 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1773 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93052 | 0.539 |
Mature Green Tomato/Ripe Tomato | 0.77157 | 0.018 |
Immature Eggplant/Mature Eggplant | 1.2172 | 0.07 |
Ripe Pepper/Ripe Tomato | 0.35367 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.6248 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06608 | 1 |
1-1-2/M82 | 0.96931 | 1 |
12-2/M82 | 1.00127 | 1 |
12-4/M82 | 1.01377 | 1 |
1-3/M82 | 0.95797 | 0.501 |
2-1-1/M82 | 1.07011 | 1 |
2-1/M82 | 0.89996 | 0.74 |
2-6/M82 | 0.93433 | 1 |
3-2/M82 | 1.03967 | 0.967 |
4-1-1/M82 | 1.19039 | 1 |
4-1/M82 | 1.01215 | 1 |
4-3-2/M82 | 1.16857 | |
4-3/M82 | 1.00249 | 1 |
5-3/M82 | 1.02438 | 1 |
6-2/M82 | 1.07464 | 1 |
6-3/M82 | 1.01696 | 1 |
7-1/M82 | 1.01577 | 1 |
7-2/M82 | 1.09735 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.132 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.8301 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.70976 | 0.504 |
IL1-4/WTpooled | 1.5156 | 1 |
WT/WTpooled | 1.00644 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00353 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99514 | 1 |
DC3000/delta hrp 6h | 1.02906 | 0.95 |
DC3000/delta hrp 12h | 1.13375 | 1 |
DC3000/delta hrp 24h | 0.88799 | 0.178 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08657 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.02433 | 0.646 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91389 | 1 |
Exp 36h | 1.14993 | 1 |
Exp 60h | 1.2604 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98921 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.29573 | 0.272 |
Var 12h NI row2-row1 | 1.16036 | 1 |
Var 36h I row2-row1 | 1.05538 | 1 |
Var 36h NI row2-row1 | 0.89857 | 0.645 |
Var 60h I row2-row1 | 1.03836 | 1 |
Var 60h NI row2-row1 | 1.13784 | 0.904 |
Time course 0hI-0hNI | 1.05529 | 0.852 |
Time course 12hI-12hNI | 1.02151 | 0.827 |
Time course 36hI-36hNI | 1.05229 | 0.58 |
Time course 60hI-60hNI | 1.45468 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98421 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.47501 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.07456 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00681 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87209 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02139 | 1 |
Manapal/WT (break) | 0.88748 | 1 |
Manapal/WT (red) | 0.82534 | 0.181 |
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