Expression of 1-1-7.3.20.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082390.863
27DAP/17DAP1.196290.825
39DAP/27DAP1.033110.82
41DAP/39DAP1.438150.38
42DAP/41DAP0.981861
43DAP/42DAP1.008380.937
47DAP/43DAP1.016280.895
52DAP/47DAP1.206930.696
57DAP/52DAP1.029771

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.954210.503
17DAP/reference0.781320.05
27DAP/reference1.683090.569
39DAP/reference0.81939
41DAP/reference0.770660.434
42DAP/reference0.980850.469
43DAP/reference0.4168
47DAP/reference0.998210.72
52DAP/reference0.83964
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.981860.732
27DAP/17DAP0.998950.969
39DAP/27DAP1.039040.691
41DAP/39DAP1.034230.876
42DAP/41DAP1.003831
43DAP/42DAP0.987930.831
47DAP/43DAP0.986510.923
52DAP/47DAP0.996320.962
57DAP/52DAP1.042010.777
57DAP/7DAP1.094281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.103390.481
17DAP/reference0.950690.338
27DAP/reference0.882710.045
39DAP/reference0.784550.011
41DAP/reference0.839480.103
42DAP/reference0.666910.01
43DAP/reference0.882670.166
47DAP/reference0.964160.504
52DAP/reference0.883470.115
57DAP/reference0.989030.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959060.487
17DAP/reference0.919150.045
27DAP/reference0.943690.452
39DAP/reference0.897910.041
41DAP/reference0.843940.073
42DAP/reference0.95323
43DAP/reference0.810110.068
47DAP/reference0.549830.058
52DAP/reference0.925950.04
57DAP/reference0.905810.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.845850.065
17DAP/reference0.968390.579
27DAP/reference0.840810.031
39DAP/reference0.867980.029
41DAP/reference0.99780.826
42DAP/reference0.943480.445
43DAP/reference1.140880.28
47DAP/reference1.021190.61
52DAP/reference1.019890.941
57DAP/reference0.967240.366

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.944431
26DAP/20DAP0.964461
34DAP/26DAP0.978730.927
51DAP/34DAP0.950810.66
52DAP/51DAP1.018440.86
53DAP/52DAP1.024191
55DAP/53DAP1.008121
57DAP/55DAP1.00720.94
62DAP/57DAP1.043411
68DAP/62DAP0.890990.314
68DAP/14DAP1.053670.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.17730.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.930520.539
Mature Green Tomato/Ripe Tomato0.771570.018
Immature Eggplant/Mature Eggplant1.21720.07
Ripe Pepper/Ripe Tomato0.353670.224
Mature Eggplant/Ripe Tomato0.62480.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.066081
1-1-2/M820.969311
12-2/M821.001271
12-4/M821.013771
1-3/M820.957970.501
2-1-1/M821.070111
2-1/M820.899960.74
2-6/M820.934331
3-2/M821.039670.967
4-1-1/M821.190391
4-1/M821.012151
4-3-2/M821.16857
4-3/M821.002491
5-3/M821.024381
6-2/M821.074641
6-3/M821.016961
7-1/M821.015771
7-2/M821.097350.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.1320.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.83011
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.709760.504
IL1-4/WTpooled1.51561
WT/WTpooled1.006441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.003531

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995141
DC3000/delta hrp 6h1.029060.95
DC3000/delta hrp 12h1.133751
DC3000/delta hrp 24h0.887990.178

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.086570.208
DC3000 delta B/DC3000 delta AB1.024330.646

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.913891
Exp 36h1.149931
Exp 60h1.26040.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989211
Var 0hN/AN/A
Var 12h I row2-row11.295730.272
Var 12h NI row2-row11.160361
Var 36h I row2-row11.055381
Var 36h NI row2-row10.898570.645
Var 60h I row2-row11.038361
Var 60h NI row2-row11.137840.904
Time course 0hI-0hNI1.055290.852
Time course 12hI-12hNI1.021510.827
Time course 36hI-36hNI1.052290.58
Time course 60hI-60hNI1.454680.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984210.722
transgenic ySAMdc/azygous control (breaker)1.475010.161
transgenic ySAMdc/azygous control (red)1.074561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006810.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.872090.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.021391
Manapal/WT (break)0.887481
Manapal/WT (red)0.825340.181