Expression of 1-1-7.3.3.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28824 | 0.863 |
27DAP/17DAP | 2.29978 | 0.592 |
39DAP/27DAP | 1.03304 | 0.876 |
41DAP/39DAP | 1.6578 | 0.63 |
42DAP/41DAP | 1.09581 | 1 |
43DAP/42DAP | 0.94025 | 0.699 |
47DAP/43DAP | 0.74308 | 0.28 |
52DAP/47DAP | 1.86264 | 0.553 |
57DAP/52DAP | 1.77409 | 0.958 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26159 | 0.116 |
17DAP/reference | 0.97885 | 0.858 |
27DAP/reference | 1.30198 | |
39DAP/reference | 1.11261 | 0.413 |
41DAP/reference | 1.10336 | 1 |
42DAP/reference | 0.52398 | |
43DAP/reference | 0.64533 | |
47DAP/reference | 1.51189 | 1 |
52DAP/reference | 0.51322 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 0.815 | |
39DAP/27DAP | 0.84236 | |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.75227 | |
43DAP/42DAP | 3.3923 | 0.585 |
47DAP/43DAP | 1.53005 | 0.359 |
52DAP/47DAP | N/A | N/A |
57DAP/52DAP | 1.52706 | 0.563 |
57DAP/7DAP | 0.95325 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.28628 | 0.048 |
17DAP/reference | 0.2315 | 0.011 |
27DAP/reference | 0.42753 | 0.01 |
39DAP/reference | 0.21628 | 0.011 |
41DAP/reference | 0.15269 | 0.009 |
42DAP/reference | 0.16777 | 0.01 |
43DAP/reference | 0.32193 | 0.015 |
47DAP/reference | 0.23368 | 0.026 |
52DAP/reference | 0.18874 | 0.009 |
57DAP/reference | 0.37846 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89641 | 0.607 |
17DAP/reference | 0.37948 | |
27DAP/reference | 0.90483 | 0.423 |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.12841 | |
42DAP/reference | 1.26817 | |
43DAP/reference | 1.16748 | 0.063 |
47DAP/reference | 1.09383 | 0.169 |
52DAP/reference | 1.01779 | |
57DAP/reference | N/A | N/A |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.27865 | 0.018 |
17DAP/reference | 0.90435 | 0.364 |
27DAP/reference | 0.25887 | 0.022 |
39DAP/reference | 0.23329 | 0.006 |
41DAP/reference | 0.27544 | 0.014 |
42DAP/reference | 0.28063 | 0.014 |
43DAP/reference | 0.26515 | 0.012 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.25263 | 0.032 |
57DAP/reference | N/A | N/A |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.46494 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.75282 | |
51DAP/34DAP | 0.90054 | 0.727 |
52DAP/51DAP | 1.68975 | 0.04 |
53DAP/52DAP | 0.56014 | 0.051 |
55DAP/53DAP | 1.28207 | 0.798 |
57DAP/55DAP | 0.72921 | 0.548 |
62DAP/57DAP | 0.90111 | 0.994 |
68DAP/62DAP | 3.30181 | |
68DAP/14DAP | 1.37904 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04663 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.76743 | |
IL7-3/WTpooled | 0.93323 | |
IL12-4/WTpooled | 0.73569 | 0.539 |
IL1-4/WTpooled | 1.04814 | 1 |
WT/WTpooled | 1.24361 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.5898 | 0.183 |
Manapal/WT (red) | 1.39708 | 0.164 |
|
|