Expression of 1-1-7.3.3.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.288240.863
27DAP/17DAP2.299780.592
39DAP/27DAP1.033040.876
41DAP/39DAP1.65780.63
42DAP/41DAP1.095811
43DAP/42DAP0.940250.699
47DAP/43DAP0.743080.28
52DAP/47DAP1.862640.553
57DAP/52DAP1.774090.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.261590.116
17DAP/reference0.978850.858
27DAP/reference1.30198
39DAP/reference1.112610.413
41DAP/reference1.103361
42DAP/reference0.52398
43DAP/reference0.64533
47DAP/reference1.511891
52DAP/reference0.51322
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP0.815
39DAP/27DAP0.84236
41DAP/39DAPN/AN/A
42DAP/41DAP1.75227
43DAP/42DAP3.39230.585
47DAP/43DAP1.530050.359
52DAP/47DAPN/AN/A
57DAP/52DAP1.527060.563
57DAP/7DAP0.953251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.286280.048
17DAP/reference0.23150.011
27DAP/reference0.427530.01
39DAP/reference0.216280.011
41DAP/reference0.152690.009
42DAP/reference0.167770.01
43DAP/reference0.321930.015
47DAP/reference0.233680.026
52DAP/reference0.188740.009
57DAP/reference0.378460.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896410.607
17DAP/reference0.37948
27DAP/reference0.904830.423
39DAP/referenceN/AN/A
41DAP/reference1.12841
42DAP/reference1.26817
43DAP/reference1.167480.063
47DAP/reference1.093830.169
52DAP/reference1.01779
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.278650.018
17DAP/reference0.904350.364
27DAP/reference0.258870.022
39DAP/reference0.233290.006
41DAP/reference0.275440.014
42DAP/reference0.280630.014
43DAP/reference0.265150.012
47DAP/referenceN/AN/A
52DAP/reference0.252630.032
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.464941
26DAP/20DAPN/AN/A
34DAP/26DAP0.75282
51DAP/34DAP0.900540.727
52DAP/51DAP1.689750.04
53DAP/52DAP0.560140.051
55DAP/53DAP1.282070.798
57DAP/55DAP0.729210.548
62DAP/57DAP0.901110.994
68DAP/62DAP3.30181
68DAP/14DAP1.37904

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.04663
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.76743
IL7-3/WTpooled0.93323
IL12-4/WTpooled0.735690.539
IL1-4/WTpooled1.048141
WT/WTpooled1.243611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.58980.183
Manapal/WT (red)1.397080.164