Expression of 1-1-7.3.3.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95256 | 0.689 |
27DAP/17DAP | 0.59496 | 0.035 |
39DAP/27DAP | 0.78152 | 0.353 |
41DAP/39DAP | 0.65536 | 0.058 |
42DAP/41DAP | 0.93826 | 1 |
43DAP/42DAP | 1.30068 | 0.402 |
47DAP/43DAP | 0.81024 | 0.41 |
52DAP/47DAP | 0.75809 | 0.42 |
57DAP/52DAP | 0.94881 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87423 | 0.188 |
17DAP/reference | 1.00857 | 1 |
27DAP/reference | 1.07003 | 0.457 |
39DAP/reference | 0.92792 | 0.188 |
41DAP/reference | 0.92806 | 0.434 |
42DAP/reference | 1.11179 | 1 |
43DAP/reference | 0.70049 | 0.17 |
47DAP/reference | 0.8675 | 0.004 |
52DAP/reference | 0.88664 | 0.371 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24326 | 0.271 |
27DAP/17DAP | 1.09943 | 0.9 |
39DAP/27DAP | 0.64699 | 0.034 |
41DAP/39DAP | 0.98635 | 0.934 |
42DAP/41DAP | 1.10365 | 0.861 |
43DAP/42DAP | 0.89761 | 0.157 |
47DAP/43DAP | 0.90825 | 0.339 |
52DAP/47DAP | 0.86379 | 0.321 |
57DAP/52DAP | 0.92396 | 0.598 |
57DAP/7DAP | 0.4985 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.19196 | 0.024 |
17DAP/reference | 1.91322 | 0.006 |
27DAP/reference | 1.25709 | 0.013 |
39DAP/reference | 1.56931 | 0.006 |
41DAP/reference | 1.37221 | 0.057 |
42DAP/reference | 1.4504 | 0.014 |
43DAP/reference | 1.73799 | 0.006 |
47DAP/reference | 1.35579 | 0.083 |
52DAP/reference | 1.40202 | 0.02 |
57DAP/reference | 1.717 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13711 | 0.538 |
17DAP/reference | 1.06917 | 0.571 |
27DAP/reference | 1.1062 | 0.86 |
39DAP/reference | 0.97934 | 0.497 |
41DAP/reference | 1.14167 | 0.301 |
42DAP/reference | 1.10762 | 0.309 |
43DAP/reference | 0.68495 | 0.02 |
47DAP/reference | 0.90921 | 0.133 |
52DAP/reference | 0.94021 | 0.22 |
57DAP/reference | 0.74295 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.25486 | 0.018 |
17DAP/reference | 1.56426 | 0.224 |
27DAP/reference | 1.91407 | 0.014 |
39DAP/reference | 1.66453 | 0.016 |
41DAP/reference | 1.40748 | 0.038 |
42DAP/reference | 1.29078 | 0.117 |
43DAP/reference | 1.43203 | 0.05 |
47DAP/reference | 1.1577 | 0.218 |
52DAP/reference | 1.66108 | 0.072 |
57DAP/reference | 1.4066 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14708 | 0.966 |
26DAP/20DAP | 1.3389 | 0.293 |
34DAP/26DAP | 0.9107 | 0.653 |
51DAP/34DAP | 0.71361 | 0.069 |
52DAP/51DAP | 0.92558 | 1 |
53DAP/52DAP | 0.77084 | 0.307 |
55DAP/53DAP | 0.57657 | 0.022 |
57DAP/55DAP | 0.88135 | 0.496 |
62DAP/57DAP | 1.44996 | 0.217 |
68DAP/62DAP | 1.61128 | 0.058 |
68DAP/14DAP | 1.53322 | 0.108 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77103 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.94963 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.66041 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.75013 | 0.065 |
Ripe Pepper/Ripe Tomato | 1.77563 | 1 |
Mature Eggplant/Ripe Tomato | 3.73572 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.31399 | 0.574 |
1-1-2/M82 | 1.21586 | 1 |
12-2/M82 | 0.85452 | 0.955 |
12-4/M82 | 1.15327 | 1 |
1-3/M82 | 1.76108 | 1 |
2-1-1/M82 | 0.95319 | 1 |
2-1/M82 | 0.44732 | 0.322 |
2-6/M82 | 3.33934 | 0.329 |
3-2/M82 | 0.61838 | 0.752 |
4-1-1/M82 | 1.25421 | 1 |
4-1/M82 | 1.69947 | 1 |
4-3-2/M82 | 1.4229 | 0.241 |
4-3/M82 | 1.11952 | 1 |
5-3/M82 | 0.71479 | 0.642 |
6-2/M82 | 1.24636 | 1 |
6-3/M82 | 1.25465 | 1 |
7-1/M82 | 0.69895 | 0.509 |
7-2/M82 | 2.4128 | 0.385 |
9-3-2/M82 | 1.69876 | 0.191 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.60587 | 0.247 |
IL2-6/WTpooled | 0.5457 | |
IL7-5/WTpooled | 1.35526 | |
IL7-3/WTpooled | 0.95952 | 1 |
IL12-4/WTpooled | 0.99056 | 1 |
IL1-4/WTpooled | 0.94364 | 0.699 |
WT/WTpooled | 1.26769 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91904 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04181 | 0.921 |
DC3000/delta hrp 6h | 0.96738 | 0.95 |
DC3000/delta hrp 12h | 1.10084 | 1 |
DC3000/delta hrp 24h | 0.45869 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.61029 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.60789 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93115 | 1 |
Exp 36h | 0.89113 | 0.699 |
Exp 60h | 0.79286 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01087 | 1 |
Var 0h | 0.97567 | 0.98 |
Var 12h I row2-row1 | 0.83757 | 0.357 |
Var 12h NI row2-row1 | 0.93322 | 0.713 |
Var 36h I row2-row1 | 0.91204 | 0.805 |
Var 36h NI row2-row1 | 1.2859 | 0.482 |
Var 60h I row2-row1 | 1.05115 | 1 |
Var 60h NI row2-row1 | 1.12597 | 1 |
Time course 0hI-0hNI | 0.92832 | 0.433 |
Time course 12hI-12hNI | 1.04187 | 0.754 |
Time course 36hI-36hNI | 0.90133 | 0.15 |
Time course 60hI-60hNI | 0.14275 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96909 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.22124 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21548 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00592 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.47757 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.77773 | 0.105 |
Manapal/WT (break) | 1.85253 | 0.183 |
Manapal/WT (red) | 2.05133 | 0.137 |
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