Expression of 1-1-7.3.3.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99957 | 0.919 |
27DAP/17DAP | 1.07281 | 0.92 |
39DAP/27DAP | 1.05164 | 0.903 |
41DAP/39DAP | 0.99007 | 0.925 |
42DAP/41DAP | 0.95137 | 1 |
43DAP/42DAP | 0.98304 | 0.93 |
47DAP/43DAP | 1.00939 | 0.979 |
52DAP/47DAP | 0.81439 | 0.502 |
57DAP/52DAP | 1.03562 | 0.962 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92595 | 0.422 |
17DAP/reference | 0.87637 | 0.419 |
27DAP/reference | 0.96816 | 0.654 |
39DAP/reference | 1.04468 | 0.203 |
41DAP/reference | 1.115 | 0.079 |
42DAP/reference | 0.93809 | 0.188 |
43DAP/reference | 0.75997 | |
47DAP/reference | 0.89233 | 0.322 |
52DAP/reference | 1.07272 | 0.083 |
57DAP/reference | 0.50764 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96563 | 0.496 |
27DAP/17DAP | 1.06275 | 0.788 |
39DAP/27DAP | 0.973 | 0.648 |
41DAP/39DAP | 0.95165 | 0.729 |
42DAP/41DAP | 1.01922 | 0.927 |
43DAP/42DAP | 0.98148 | 0.729 |
47DAP/43DAP | 0.99897 | 1 |
52DAP/47DAP | 0.99582 | 0.969 |
57DAP/52DAP | 0.94371 | 0.551 |
57DAP/7DAP | 1.01371 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91754 | 0.039 |
17DAP/reference | 0.9761 | 0.192 |
27DAP/reference | 0.97065 | 0.082 |
39DAP/reference | 1.03317 | 0.669 |
41DAP/reference | 1.02057 | 0.637 |
42DAP/reference | 1.06073 | 0.174 |
43DAP/reference | 1.00815 | 1 |
47DAP/reference | 0.96182 | 0.293 |
52DAP/reference | 1.01286 | 0.941 |
57DAP/reference | 0.95517 | 0.176 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02837 | 0.634 |
17DAP/reference | 0.95116 | 0.279 |
27DAP/reference | 0.89018 | 0.173 |
39DAP/reference | 0.93592 | 0.243 |
41DAP/reference | 0.99504 | 0.615 |
42DAP/reference | 0.94008 | 0.014 |
43DAP/reference | 1.06475 | 0.457 |
47DAP/reference | 1.0198 | 0.527 |
52DAP/reference | 0.96423 | 0.407 |
57DAP/reference | 1.0035 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01187 | 0.793 |
17DAP/reference | 0.99956 | 0.9 |
27DAP/reference | 0.98883 | 0.49 |
39DAP/reference | 0.98577 | 0.504 |
41DAP/reference | 1.02192 | 0.796 |
42DAP/reference | 0.96704 | 0.445 |
43DAP/reference | 0.95258 | 0.206 |
47DAP/reference | 1.03266 | 0.355 |
52DAP/reference | 0.98424 | 0.747 |
57DAP/reference | 0.93116 | 0.203 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99295 | 1 |
26DAP/20DAP | 1.00305 | 1 |
34DAP/26DAP | 1.06341 | 1 |
51DAP/34DAP | 1.03107 | 0.795 |
52DAP/51DAP | 0.98984 | 1 |
53DAP/52DAP | 0.93717 | 0.684 |
55DAP/53DAP | 0.9619 | 0.698 |
57DAP/55DAP | 1.1714 | 0.865 |
62DAP/57DAP | 1.01891 | 0.902 |
68DAP/62DAP | 0.91578 | 0.505 |
68DAP/14DAP | 1.21748 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01906 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.86248 | 0.377 |
Mature Green Tomato/Ripe Tomato | 0.95755 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.02183 | 0.633 |
Ripe Pepper/Ripe Tomato | 1.61186 | 1 |
Mature Eggplant/Ripe Tomato | 1.28651 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05876 | 1 |
1-1-2/M82 | 1.00519 | 1 |
12-2/M82 | 0.89625 | 0.955 |
12-4/M82 | 1.02319 | 1 |
1-3/M82 | 0.96608 | |
2-1-1/M82 | 1.02466 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98507 | 1 |
3-2/M82 | 1.01033 | 1 |
4-1-1/M82 | 1.01239 | 1 |
4-1/M82 | 0.9842 | 1 |
4-3-2/M82 | 1.01597 | 1 |
4-3/M82 | 0.96814 | 1 |
5-3/M82 | 1.03534 | 1 |
6-2/M82 | 1.19901 | 1 |
6-3/M82 | 1.02206 | 1 |
7-1/M82 | 0.76042 | 0.803 |
7-2/M82 | 1.04294 | 1 |
9-3-2/M82 | 0.86586 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79057 | 0.247 |
IL2-6/WTpooled | 0.94538 | 1 |
IL7-5/WTpooled | 1.22514 | 0.792 |
IL7-3/WTpooled | 0.62486 | |
IL12-4/WTpooled | 1.5022 | |
IL1-4/WTpooled | 0.94283 | 0.834 |
WT/WTpooled | 1.20002 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89054 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96658 | 1 |
DC3000/delta hrp 6h | 1.11152 | 1 |
DC3000/delta hrp 12h | 1.10757 | 1 |
DC3000/delta hrp 24h | 1.07652 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06395 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.03984 | 0.535 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03598 | 1 |
Exp 36h | 0.83605 | 0.449 |
Exp 60h | 0.8897 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.89567 | 0.933 |
Var 12h I row2-row1 | 1.67461 | 0.406 |
Var 12h NI row2-row1 | 0.97784 | 1 |
Var 36h I row2-row1 | 1.01103 | 1 |
Var 36h NI row2-row1 | 0.87833 | 0.584 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.06909 | 0.904 |
Time course 0hI-0hNI | 1.13433 | 0.603 |
Time course 12hI-12hNI | 1.08025 | 0.88 |
Time course 36hI-36hNI | 1.76289 | 0.008 |
Time course 60hI-60hNI | 2.03299 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88994 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.33461 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.14619 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00992 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.2586 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26827 | 0.093 |
Manapal/WT (break) | 1.21518 | 0.381 |
Manapal/WT (red) | 1.26412 | 0.413 |
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