Expression of 1-1-7.3.3.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999570.919
27DAP/17DAP1.072810.92
39DAP/27DAP1.051640.903
41DAP/39DAP0.990070.925
42DAP/41DAP0.951371
43DAP/42DAP0.983040.93
47DAP/43DAP1.009390.979
52DAP/47DAP0.814390.502
57DAP/52DAP1.035620.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925950.422
17DAP/reference0.876370.419
27DAP/reference0.968160.654
39DAP/reference1.044680.203
41DAP/reference1.1150.079
42DAP/reference0.938090.188
43DAP/reference0.75997
47DAP/reference0.892330.322
52DAP/reference1.072720.083
57DAP/reference0.50764

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965630.496
27DAP/17DAP1.062750.788
39DAP/27DAP0.9730.648
41DAP/39DAP0.951650.729
42DAP/41DAP1.019220.927
43DAP/42DAP0.981480.729
47DAP/43DAP0.998971
52DAP/47DAP0.995820.969
57DAP/52DAP0.943710.551
57DAP/7DAP1.013711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.917540.039
17DAP/reference0.97610.192
27DAP/reference0.970650.082
39DAP/reference1.033170.669
41DAP/reference1.020570.637
42DAP/reference1.060730.174
43DAP/reference1.008151
47DAP/reference0.961820.293
52DAP/reference1.012860.941
57DAP/reference0.955170.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028370.634
17DAP/reference0.951160.279
27DAP/reference0.890180.173
39DAP/reference0.935920.243
41DAP/reference0.995040.615
42DAP/reference0.940080.014
43DAP/reference1.064750.457
47DAP/reference1.01980.527
52DAP/reference0.964230.407
57DAP/reference1.00351

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011870.793
17DAP/reference0.999560.9
27DAP/reference0.988830.49
39DAP/reference0.985770.504
41DAP/reference1.021920.796
42DAP/reference0.967040.445
43DAP/reference0.952580.206
47DAP/reference1.032660.355
52DAP/reference0.984240.747
57DAP/reference0.931160.203

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992951
26DAP/20DAP1.003051
34DAP/26DAP1.063411
51DAP/34DAP1.031070.795
52DAP/51DAP0.989841
53DAP/52DAP0.937170.684
55DAP/53DAP0.96190.698
57DAP/55DAP1.17140.865
62DAP/57DAP1.018910.902
68DAP/62DAP0.915780.505
68DAP/14DAP1.217480.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.019061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.862480.377
Mature Green Tomato/Ripe Tomato0.957550.611
Immature Eggplant/Mature Eggplant1.021830.633
Ripe Pepper/Ripe Tomato1.611861
Mature Eggplant/Ripe Tomato1.286511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.058761
1-1-2/M821.005191
12-2/M820.896250.955
12-4/M821.023191
1-3/M820.96608
2-1-1/M821.024661
2-1/M82N/AN/A
2-6/M820.985071
3-2/M821.010331
4-1-1/M821.012391
4-1/M820.98421
4-3-2/M821.015971
4-3/M820.968141
5-3/M821.035341
6-2/M821.199011
6-3/M821.022061
7-1/M820.760420.803
7-2/M821.042941
9-3-2/M820.865860.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.790570.247
IL2-6/WTpooled0.945381
IL7-5/WTpooled1.225140.792
IL7-3/WTpooled0.62486
IL12-4/WTpooled1.5022
IL1-4/WTpooled0.942830.834
WT/WTpooled1.200021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.890540.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.966581
DC3000/delta hrp 6h1.111521
DC3000/delta hrp 12h1.107571
DC3000/delta hrp 24h1.076520.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.063950.29
DC3000 delta B/DC3000 delta AB1.039840.535

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.035981
Exp 36h0.836050.449
Exp 60h0.88970.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.895670.933
Var 12h I row2-row11.674610.406
Var 12h NI row2-row10.977841
Var 36h I row2-row11.011031
Var 36h NI row2-row10.878330.584
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.069090.904
Time course 0hI-0hNI1.134330.603
Time course 12hI-12hNI1.080250.88
Time course 36hI-36hNI1.762890.008
Time course 60hI-60hNI2.032990.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.889940.314
transgenic ySAMdc/azygous control (breaker)1.334610.248
transgenic ySAMdc/azygous control (red)1.146190.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009920.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.25860.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.268270.093
Manapal/WT (break)1.215180.381
Manapal/WT (red)1.264120.413