Expression of 1-1-7.3.3.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75861 | 0.26 |
27DAP/17DAP | 0.89693 | 0.649 |
39DAP/27DAP | 1.65851 | 0.154 |
41DAP/39DAP | 0.91925 | 0.65 |
42DAP/41DAP | 1.06492 | 1 |
43DAP/42DAP | 1.15044 | 0.929 |
47DAP/43DAP | 0.71778 | 0.245 |
52DAP/47DAP | 1.18919 | 0.856 |
57DAP/52DAP | 1.21723 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87585 | 0.182 |
17DAP/reference | 0.91965 | 0.321 |
27DAP/reference | 1.70089 | 0.008 |
39DAP/reference | 2.00161 | 0.093 |
41DAP/reference | 0.96298 | 0.814 |
42DAP/reference | 2.78879 | 0.001 |
43DAP/reference | 2.9177 | |
47DAP/reference | 4.1407 | 0.001 |
52DAP/reference | 2.36525 | 0.01 |
57DAP/reference | 1.60919 | 0.511 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51052 | 0.041 |
27DAP/17DAP | 1.1905 | 0.407 |
39DAP/27DAP | 0.85502 | 0.235 |
41DAP/39DAP | 1.21158 | 1 |
42DAP/41DAP | 1.37458 | 0.47 |
43DAP/42DAP | 0.79342 | 0.116 |
47DAP/43DAP | 1.07848 | 0.88 |
52DAP/47DAP | 1.0484 | 0.973 |
57DAP/52DAP | 1.25507 | 0.35 |
57DAP/7DAP | 1.26524 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38883 | 0.106 |
17DAP/reference | 1.06719 | 0.361 |
27DAP/reference | 1.37892 | 0.008 |
39DAP/reference | 1.38251 | 0.005 |
41DAP/reference | 1.46326 | 0.052 |
42DAP/reference | 1.54218 | 0.009 |
43DAP/reference | 1.47909 | 0.01 |
47DAP/reference | 3.51445 | 0.014 |
52DAP/reference | 1.50691 | 0.014 |
57DAP/reference | 1.20534 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72512 | 0.145 |
17DAP/reference | 2.13629 | 0.028 |
27DAP/reference | 2.4075 | 0.029 |
39DAP/reference | 2.54696 | 0.021 |
41DAP/reference | 4.56055 | 0.005 |
42DAP/reference | 3.86007 | 0.007 |
43DAP/reference | 1.08595 | 1 |
47DAP/reference | 2.43499 | 0.008 |
52DAP/reference | 2.00879 | 0.006 |
57DAP/reference | 1.04187 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30634 | 0.101 |
17DAP/reference | 1.11595 | 1 |
27DAP/reference | 1.20853 | 0.046 |
39DAP/reference | 1.74008 | 0.004 |
41DAP/reference | 1.35393 | 0.069 |
42DAP/reference | 2.62723 | 0.02 |
43DAP/reference | 3.93639 | 0.043 |
47DAP/reference | 4.36361 | 0.006 |
52DAP/reference | 2.11269 | 0.033 |
57DAP/reference | 8.3229 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.13619 | 0.966 |
26DAP/20DAP | 1.9968 | 0.097 |
34DAP/26DAP | 0.84918 | 0.596 |
51DAP/34DAP | 3.01288 | 0.029 |
52DAP/51DAP | 0.8616 | 1 |
53DAP/52DAP | 1.53951 | 0.047 |
55DAP/53DAP | 0.66625 | 0.053 |
57DAP/55DAP | 0.70648 | 0.084 |
62DAP/57DAP | 0.68146 | 0.162 |
68DAP/62DAP | 2.02033 | 0.022 |
68DAP/14DAP | 2.06608 | 0.043 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.99978 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89652 | 0.426 |
Mature Green Tomato/Ripe Tomato | 1.26725 | 0.237 |
Immature Eggplant/Mature Eggplant | 1.37255 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.00625 | 1 |
Mature Eggplant/Ripe Tomato | 0.61249 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.8856 | 0.883 |
1-1-2/M82 | 0.82508 | 1 |
12-2/M82 | 1.10296 | 1 |
12-4/M82 | 1.06865 | 1 |
1-3/M82 | 3.26889 | |
2-1-1/M82 | 1.0031 | 1 |
2-1/M82 | 0.6653 | |
2-6/M82 | 0.78661 | 1 |
3-2/M82 | 1.23186 | |
4-1-1/M82 | 0.67839 | 1 |
4-1/M82 | 0.71181 | |
4-3-2/M82 | 0.88169 | 1 |
4-3/M82 | 1.01677 | 1 |
5-3/M82 | 1.0908 | 0.572 |
6-2/M82 | 0.93535 | |
6-3/M82 | 1.12962 | 1 |
7-1/M82 | 0.71315 | |
7-2/M82 | 1.1287 | |
9-3-2/M82 | 1.35011 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.32631 | 0.277 |
IL2-6/WTpooled | 0.91047 | 1 |
IL7-5/WTpooled | 0.29919 | |
IL7-3/WTpooled | 0.81426 | 0.31 |
IL12-4/WTpooled | 1.08618 | 0.538 |
IL1-4/WTpooled | 1.15245 | 1 |
WT/WTpooled | 1.0908 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11147 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11787 | 0.914 |
DC3000/delta hrp 6h | 0.97462 | 0.95 |
DC3000/delta hrp 12h | 1.16392 | 1 |
DC3000/delta hrp 24h | 0.78753 | 0.124 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24627 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.3453 | 0.115 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10729 | 1 |
Exp 36h | 1.02145 | 1 |
Exp 60h | 1.46688 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.6823 | 0.291 |
Var 12h I row2-row1 | 1.48053 | 0.613 |
Var 12h NI row2-row1 | 1.08905 | 1 |
Var 36h I row2-row1 | 0.64534 | 1 |
Var 36h NI row2-row1 | 1.06201 | 1 |
Var 60h I row2-row1 | 0.6857 | |
Var 60h NI row2-row1 | 1.04222 | 1 |
Time course 0hI-0hNI | 1.08099 | |
Time course 12hI-12hNI | 1.26567 | |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91909 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.63777 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.921 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.24735 | 0.061 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80447 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08221 | 1 |
Manapal/WT (break) | 1.13577 | 1 |
Manapal/WT (red) | 0.91563 | 0.315 |
|
|