Expression of 1-1-7.3.3.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.758610.26
27DAP/17DAP0.896930.649
39DAP/27DAP1.658510.154
41DAP/39DAP0.919250.65
42DAP/41DAP1.064921
43DAP/42DAP1.150440.929
47DAP/43DAP0.717780.245
52DAP/47DAP1.189190.856
57DAP/52DAP1.217231

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.875850.182
17DAP/reference0.919650.321
27DAP/reference1.700890.008
39DAP/reference2.001610.093
41DAP/reference0.962980.814
42DAP/reference2.788790.001
43DAP/reference2.9177
47DAP/reference4.14070.001
52DAP/reference2.365250.01
57DAP/reference1.609190.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.510520.041
27DAP/17DAP1.19050.407
39DAP/27DAP0.855020.235
41DAP/39DAP1.211581
42DAP/41DAP1.374580.47
43DAP/42DAP0.793420.116
47DAP/43DAP1.078480.88
52DAP/47DAP1.04840.973
57DAP/52DAP1.255070.35
57DAP/7DAP1.265241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.388830.106
17DAP/reference1.067190.361
27DAP/reference1.378920.008
39DAP/reference1.382510.005
41DAP/reference1.463260.052
42DAP/reference1.542180.009
43DAP/reference1.479090.01
47DAP/reference3.514450.014
52DAP/reference1.506910.014
57DAP/reference1.205340.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.725120.145
17DAP/reference2.136290.028
27DAP/reference2.40750.029
39DAP/reference2.546960.021
41DAP/reference4.560550.005
42DAP/reference3.860070.007
43DAP/reference1.085951
47DAP/reference2.434990.008
52DAP/reference2.008790.006
57DAP/reference1.041870.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.306340.101
17DAP/reference1.115951
27DAP/reference1.208530.046
39DAP/reference1.740080.004
41DAP/reference1.353930.069
42DAP/reference2.627230.02
43DAP/reference3.936390.043
47DAP/reference4.363610.006
52DAP/reference2.112690.033
57DAP/reference8.32290.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.136190.966
26DAP/20DAP1.99680.097
34DAP/26DAP0.849180.596
51DAP/34DAP3.012880.029
52DAP/51DAP0.86161
53DAP/52DAP1.539510.047
55DAP/53DAP0.666250.053
57DAP/55DAP0.706480.084
62DAP/57DAP0.681460.162
68DAP/62DAP2.020330.022
68DAP/14DAP2.066080.043

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.999780.041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.896520.426
Mature Green Tomato/Ripe Tomato1.267250.237
Immature Eggplant/Mature Eggplant1.372550.05
Ripe Pepper/Ripe Tomato1.006251
Mature Eggplant/Ripe Tomato0.612491

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.88560.883
1-1-2/M820.825081
12-2/M821.102961
12-4/M821.068651
1-3/M823.26889
2-1-1/M821.00311
2-1/M820.6653
2-6/M820.786611
3-2/M821.23186
4-1-1/M820.678391
4-1/M820.71181
4-3-2/M820.881691
4-3/M821.016771
5-3/M821.09080.572
6-2/M820.93535
6-3/M821.129621
7-1/M820.71315
7-2/M821.1287
9-3-2/M821.35011

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.326310.277
IL2-6/WTpooled0.910471
IL7-5/WTpooled0.29919
IL7-3/WTpooled0.814260.31
IL12-4/WTpooled1.086180.538
IL1-4/WTpooled1.152451
WT/WTpooled1.09081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.111471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.117870.914
DC3000/delta hrp 6h0.974620.95
DC3000/delta hrp 12h1.163921
DC3000/delta hrp 24h0.787530.124

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.246270.042
DC3000 delta B/DC3000 delta AB1.34530.115

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.107291
Exp 36h1.021451
Exp 60h1.466880.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.68230.291
Var 12h I row2-row11.480530.613
Var 12h NI row2-row11.089051
Var 36h I row2-row10.645341
Var 36h NI row2-row11.062011
Var 60h I row2-row10.6857
Var 60h NI row2-row11.042221
Time course 0hI-0hNI1.08099
Time course 12hI-12hNI1.26567
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.919090.428
transgenic ySAMdc/azygous control (breaker)0.637770.173
transgenic ySAMdc/azygous control (red)0.9211

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.247350.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.804470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.082211
Manapal/WT (break)1.135771
Manapal/WT (red)0.915630.315