Expression of 1-1-7.3.4.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95438 | 0.683 |
27DAP/17DAP | 0.84418 | 0.611 |
39DAP/27DAP | 0.81159 | 0.376 |
41DAP/39DAP | 1.12088 | 0.334 |
42DAP/41DAP | 1.05862 | 1 |
43DAP/42DAP | 1.01669 | 0.937 |
47DAP/43DAP | 0.90065 | 0.663 |
52DAP/47DAP | 1.07042 | 0.869 |
57DAP/52DAP | 1.0079 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95925 | 0.177 |
17DAP/reference | 0.99934 | 1 |
27DAP/reference | 1.00818 | 1 |
39DAP/reference | 1.01127 | 0.771 |
41DAP/reference | 0.97775 | 0.667 |
42DAP/reference | 0.92887 | 0.011 |
43DAP/reference | 0.99951 | 0.942 |
47DAP/reference | 0.95347 | 0.077 |
52DAP/reference | 0.92619 | 0.053 |
57DAP/reference | 0.90356 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02289 | 0.749 |
27DAP/17DAP | 0.96181 | 0.508 |
39DAP/27DAP | 1.04289 | 0.603 |
41DAP/39DAP | 1.07473 | 0.682 |
42DAP/41DAP | 1.00283 | 0.939 |
43DAP/42DAP | 1.02174 | 0.382 |
47DAP/43DAP | 1.01575 | 0.88 |
52DAP/47DAP | 0.99735 | 0.97 |
57DAP/52DAP | 1.04845 | 0.695 |
57DAP/7DAP | 1.03198 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91892 | 0.146 |
17DAP/reference | 0.90682 | 0.012 |
27DAP/reference | 0.92121 | 0.019 |
39DAP/reference | 0.95455 | 0.027 |
41DAP/reference | 0.95713 | 0.103 |
42DAP/reference | 0.90037 | 0.086 |
43DAP/reference | 0.9024 | 0.126 |
47DAP/reference | 0.9062 | 0.222 |
52DAP/reference | 0.89948 | 0.024 |
57DAP/reference | 0.91522 | 0.054 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98809 | 0.831 |
17DAP/reference | 0.94608 | 0.367 |
27DAP/reference | 1.07608 | 1 |
39DAP/reference | 0.91096 | 0.359 |
41DAP/reference | 1.06916 | 0.672 |
42DAP/reference | 1.04896 | 0.596 |
43DAP/reference | 1.01328 | 0.957 |
47DAP/reference | 1.03413 | 0.572 |
52DAP/reference | 0.97693 | 0.407 |
57DAP/reference | 1.00007 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97445 | 0.249 |
17DAP/reference | 0.97484 | 0.537 |
27DAP/reference | 0.94228 | 0.03 |
39DAP/reference | 0.96089 | 0.054 |
41DAP/reference | 0.98823 | 0.682 |
42DAP/reference | 0.90299 | 0.028 |
43DAP/reference | 0.96063 | 0.143 |
47DAP/reference | 0.99752 | 0.687 |
52DAP/reference | 0.89197 | 0.142 |
57DAP/reference | 0.9147 | 0.113 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03139 | 0.966 |
26DAP/20DAP | 0.91635 | 0.512 |
34DAP/26DAP | 0.96969 | 0.893 |
51DAP/34DAP | 1.02781 | 0.666 |
52DAP/51DAP | 1.05017 | 0.596 |
53DAP/52DAP | 1.01498 | 1 |
55DAP/53DAP | 0.96867 | 0.735 |
57DAP/55DAP | 1.02123 | 0.975 |
62DAP/57DAP | 1.04055 | 0.868 |
68DAP/62DAP | 1.02737 | 1 |
68DAP/14DAP | 0.88061 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92211 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.96408 | 0.66 |
Immature Eggplant/Mature Eggplant | 0.92214 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9679 | 0.944 |
1-1-2/M82 | 0.97064 | 1 |
12-2/M82 | 1.01041 | 1 |
12-4/M82 | 1.01753 | 1 |
1-3/M82 | 0.94489 | 0.501 |
2-1-1/M82 | 1.06058 | 0.764 |
2-1/M82 | 1.4273 | 1 |
2-6/M82 | 1.04347 | 1 |
3-2/M82 | 1.00658 | 1 |
4-1-1/M82 | 0.88788 | 0.985 |
4-1/M82 | 0.9553 | 1 |
4-3-2/M82 | 0.88573 | 0.487 |
4-3/M82 | 1.03498 | 1 |
5-3/M82 | 0.99328 | 1 |
6-2/M82 | 0.97464 | 1 |
6-3/M82 | 1.0048 | 1 |
7-1/M82 | 0.97667 | 1 |
7-2/M82 | 1.14306 | 0.385 |
9-3-2/M82 | 0.92061 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.24978 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.98865 | 1 |
IL1-4/WTpooled | 0.94106 | 0.834 |
WT/WTpooled | 0.95435 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.71854 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95257 | 1 |
DC3000/delta hrp 6h | 0.93619 | 0.95 |
DC3000/delta hrp 12h | 1.18472 | 1 |
DC3000/delta hrp 24h | 0.85859 | 0.225 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82962 | 0.318 |
DC3000 delta B/DC3000 delta AB | 1.23684 | 0.468 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.65261 | 0.328 |
Exp 36h | 0.5353 | 0.434 |
Exp 60h | 0.37323 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.98288 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.29014 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.28698 | 1 |
transgenic ySAMdc/azygous control (red) | 2.21647 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01004 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.59851 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.8365 | 0.424 |
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