Expression of 1-1-7.3.5.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13078 | 0.656 |
27DAP/17DAP | 1.07 | 1 |
39DAP/27DAP | 0.98889 | 0.733 |
41DAP/39DAP | 0.99672 | 0.879 |
42DAP/41DAP | 1.38182 | 0.712 |
43DAP/42DAP | 1.08031 | 1 |
47DAP/43DAP | 0.7287 | 0.205 |
52DAP/47DAP | 1.2214 | 0.757 |
57DAP/52DAP | 1.16895 | 0.902 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38173 | 0.015 |
17DAP/reference | 1.24392 | 0.071 |
27DAP/reference | 0.99463 | 0.779 |
39DAP/reference | 1.10084 | 0.413 |
41DAP/reference | 0.98479 | 0.814 |
42DAP/reference | 0.9143 | 0.145 |
43DAP/reference | 1.1099 | 0.126 |
47DAP/reference | 1.33461 | 0.046 |
52DAP/reference | 1.11815 | 0.548 |
57DAP/reference | 1.06575 | 0.392 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95178 | 0.56 |
27DAP/17DAP | 1.08097 | 0.9 |
39DAP/27DAP | 0.74411 | 0.046 |
41DAP/39DAP | 1.09581 | 0.909 |
42DAP/41DAP | 0.98038 | 0.774 |
43DAP/42DAP | 0.87405 | 0.121 |
47DAP/43DAP | 1.01387 | 1 |
52DAP/47DAP | 0.981 | 0.9 |
57DAP/52DAP | 1.02945 | 1 |
57DAP/7DAP | 0.52045 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41871 | 0.034 |
17DAP/reference | 1.30473 | 0.007 |
27DAP/reference | 1.4687 | 0.01 |
39DAP/reference | 1.90597 | 0.007 |
41DAP/reference | 1.25202 | 0.029 |
42DAP/reference | 1.70235 | 0.006 |
43DAP/reference | 1.42597 | 0.06 |
47DAP/reference | 1.42858 | 0.056 |
52DAP/reference | 1.1362 | 0.025 |
57DAP/reference | 1.37551 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0287 | 0.794 |
17DAP/reference | 1.11187 | 0.531 |
27DAP/reference | 1.11158 | 0.704 |
39DAP/reference | 1.15948 | 0.502 |
41DAP/reference | 1.0526 | 0.878 |
42DAP/reference | 1.001 | 0.534 |
43DAP/reference | 1.27861 | 0.041 |
47DAP/reference | 1.04614 | 1 |
52DAP/reference | 0.92105 | 0.171 |
57DAP/reference | 0.93027 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.209 | 0.027 |
17DAP/reference | 0.96062 | 0.488 |
27DAP/reference | 1.07006 | 0.487 |
39DAP/reference | 1.12137 | 0.134 |
41DAP/reference | 1.03277 | 0.916 |
42DAP/reference | 1.30013 | 0.022 |
43DAP/reference | 1.18462 | 0.445 |
47DAP/reference | 1.07412 | 0.76 |
52DAP/reference | 1.59341 | 0.158 |
57DAP/reference | 1.51208 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09944 | 0.678 |
26DAP/20DAP | 1.58986 | 0.246 |
34DAP/26DAP | 1.03192 | 1 |
51DAP/34DAP | 1.80639 | 0.048 |
52DAP/51DAP | 0.91827 | 1 |
53DAP/52DAP | 1.30833 | 0.444 |
55DAP/53DAP | 1.08481 | 0.939 |
57DAP/55DAP | 0.92641 | 0.748 |
62DAP/57DAP | 1.04493 | 1 |
68DAP/62DAP | 1.06287 | 0.866 |
68DAP/14DAP | 0.91714 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.9268 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.74447 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.32001 | 0.062 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 8.30229 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.9265 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.92958 | 1 |
1-3/M82 | 1.12842 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.22574 | 0.395 |
3-2/M82 | 0.9663 | |
4-1-1/M82 | 1.16187 | 1 |
4-1/M82 | 1.10977 | |
4-3-2/M82 | 1.10857 | 0.508 |
4-3/M82 | 1.26962 | 1 |
5-3/M82 | 0.77584 | 0.49 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.80507 | 0.476 |
7-2/M82 | 1.22963 | |
9-3-2/M82 | 1.25096 | 0.125 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10114 | 1 |
IL2-6/WTpooled | 1.05784 | 0.788 |
IL7-5/WTpooled | 0.68827 | 1 |
IL7-3/WTpooled | 0.87933 | 0.418 |
IL12-4/WTpooled | 0.94835 | 1 |
IL1-4/WTpooled | 1.23318 | 1 |
WT/WTpooled | 0.83614 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03551 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96156 | 1 |
DC3000/delta hrp 6h | 1.09557 | 1 |
DC3000/delta hrp 12h | 1.02739 | 1 |
DC3000/delta hrp 24h | 0.68745 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.90139 | |
DC3000 delta B/DC3000 delta AB | 0.88617 | 0.203 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.71944 | 1 |
Exp 36h | 0.61537 | 0.406 |
Exp 60h | 0.58324 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98041 | 1 |
Var 0h | 0.79701 | 0.933 |
Var 12h I row2-row1 | 0.8635 | 0.338 |
Var 12h NI row2-row1 | 0.98569 | 1 |
Var 36h I row2-row1 | 0.90502 | 1 |
Var 36h NI row2-row1 | 1.05778 | 1 |
Var 60h I row2-row1 | 0.75562 | 0.285 |
Var 60h NI row2-row1 | 1.01473 | 1 |
Time course 0hI-0hNI | 0.92144 | 0.454 |
Time course 12hI-12hNI | 0.97633 | 0.858 |
Time course 36hI-36hNI | 1.13325 | 0.063 |
Time course 60hI-60hNI | 0.79429 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99506 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.17057 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.06965 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.83015 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.01665 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.50234 | 0.088 |
Manapal/WT (break) | 2.862 | 0.13 |
Manapal/WT (red) | 1.9583 | 0.134 |
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