Expression of 1-1-7.3.5.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.130780.656
27DAP/17DAP1.071
39DAP/27DAP0.988890.733
41DAP/39DAP0.996720.879
42DAP/41DAP1.381820.712
43DAP/42DAP1.080311
47DAP/43DAP0.72870.205
52DAP/47DAP1.22140.757
57DAP/52DAP1.168950.902

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.381730.015
17DAP/reference1.243920.071
27DAP/reference0.994630.779
39DAP/reference1.100840.413
41DAP/reference0.984790.814
42DAP/reference0.91430.145
43DAP/reference1.10990.126
47DAP/reference1.334610.046
52DAP/reference1.118150.548
57DAP/reference1.065750.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951780.56
27DAP/17DAP1.080970.9
39DAP/27DAP0.744110.046
41DAP/39DAP1.095810.909
42DAP/41DAP0.980380.774
43DAP/42DAP0.874050.121
47DAP/43DAP1.013871
52DAP/47DAP0.9810.9
57DAP/52DAP1.029451
57DAP/7DAP0.520451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.418710.034
17DAP/reference1.304730.007
27DAP/reference1.46870.01
39DAP/reference1.905970.007
41DAP/reference1.252020.029
42DAP/reference1.702350.006
43DAP/reference1.425970.06
47DAP/reference1.428580.056
52DAP/reference1.13620.025
57DAP/reference1.375510.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02870.794
17DAP/reference1.111870.531
27DAP/reference1.111580.704
39DAP/reference1.159480.502
41DAP/reference1.05260.878
42DAP/reference1.0010.534
43DAP/reference1.278610.041
47DAP/reference1.046141
52DAP/reference0.921050.171
57DAP/reference0.930270.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.2090.027
17DAP/reference0.960620.488
27DAP/reference1.070060.487
39DAP/reference1.121370.134
41DAP/reference1.032770.916
42DAP/reference1.300130.022
43DAP/reference1.184620.445
47DAP/reference1.074120.76
52DAP/reference1.593410.158
57DAP/reference1.512080.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.099440.678
26DAP/20DAP1.589860.246
34DAP/26DAP1.031921
51DAP/34DAP1.806390.048
52DAP/51DAP0.918271
53DAP/52DAP1.308330.444
55DAP/53DAP1.084810.939
57DAP/55DAP0.926410.748
62DAP/57DAP1.044931
68DAP/62DAP1.062870.866
68DAP/14DAP0.917141

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.92680.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.744470.015
Immature Eggplant/Mature Eggplant0.320010.062
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato8.302290.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.9265
12-2/M82N/AN/A
12-4/M820.929581
1-3/M821.12842
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.225740.395
3-2/M820.9663
4-1-1/M821.161871
4-1/M821.10977
4-3-2/M821.108570.508
4-3/M821.269621
5-3/M820.775840.49
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.805070.476
7-2/M821.22963
9-3-2/M821.250960.125

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.101141
IL2-6/WTpooled1.057840.788
IL7-5/WTpooled0.688271
IL7-3/WTpooled0.879330.418
IL12-4/WTpooled0.948351
IL1-4/WTpooled1.233181
WT/WTpooled0.836141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961561
DC3000/delta hrp 6h1.095571
DC3000/delta hrp 12h1.027391
DC3000/delta hrp 24h0.687450.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.90139
DC3000 delta B/DC3000 delta AB0.886170.203

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.719441
Exp 36h0.615370.406
Exp 60h0.583240.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980411
Var 0h0.797010.933
Var 12h I row2-row10.86350.338
Var 12h NI row2-row10.985691
Var 36h I row2-row10.905021
Var 36h NI row2-row11.057781
Var 60h I row2-row10.755620.285
Var 60h NI row2-row11.014731
Time course 0hI-0hNI0.921440.454
Time course 12hI-12hNI0.976330.858
Time course 36hI-36hNI1.133250.063
Time course 60hI-60hNI0.794290.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.995060.862
transgenic ySAMdc/azygous control (breaker)1.170570.161
transgenic ySAMdc/azygous control (red)1.069650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.830150.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.016650.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.502340.088
Manapal/WT (break)2.8620.13
Manapal/WT (red)1.95830.134