Expression of 1-1-7.3.6.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89774 | 0.932 |
27DAP/17DAP | 0.91506 | 0.819 |
39DAP/27DAP | 0.93321 | 0.62 |
41DAP/39DAP | 0.80874 | 0.381 |
42DAP/41DAP | 1.13436 | 0.978 |
43DAP/42DAP | 0.97082 | 0.912 |
47DAP/43DAP | 1.26963 | 0.469 |
52DAP/47DAP | 1.03326 | 0.702 |
57DAP/52DAP | 1.38971 | 0.894 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70716 | 0.029 |
17DAP/reference | 0.84835 | 0.018 |
27DAP/reference | 0.9143 | 0.314 |
39DAP/reference | 0.93029 | 0.315 |
41DAP/reference | 0.83008 | 0.085 |
42DAP/reference | 0.84664 | 0.139 |
43DAP/reference | 0.84656 | 0.028 |
47DAP/reference | 0.93752 | 0.3 |
52DAP/reference | 0.94537 | 0.35 |
57DAP/reference | 1.01603 | 0.984 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87324 | 0.402 |
27DAP/17DAP | 1.26032 | 0.353 |
39DAP/27DAP | 0.96676 | 0.754 |
41DAP/39DAP | 0.98944 | 0.91 |
42DAP/41DAP | 1.17161 | 0.675 |
43DAP/42DAP | 1.02801 | 1 |
47DAP/43DAP | 0.9006 | 0.387 |
52DAP/47DAP | 0.88655 | 0.575 |
57DAP/52DAP | 1.0587 | 0.858 |
57DAP/7DAP | 1.17878 | 0.207 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95414 | 0.445 |
17DAP/reference | 1.12319 | 1 |
27DAP/reference | 1.0329 | 0.974 |
39DAP/reference | 0.76673 | 0.083 |
41DAP/reference | 0.82817 | 0.06 |
42DAP/reference | 0.80655 | 0.06 |
43DAP/reference | 1.31381 | 0.041 |
47DAP/reference | 1.02877 | 0.915 |
52DAP/reference | 0.79058 | 0.033 |
57DAP/reference | 0.98151 | 0.494 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91328 | 0.329 |
17DAP/reference | 0.93816 | 0.337 |
27DAP/reference | 0.86919 | 0.093 |
39DAP/reference | 0.90221 | 0.072 |
41DAP/reference | 0.86108 | 0.091 |
42DAP/reference | 0.83634 | 0.061 |
43DAP/reference | 0.9101 | 0.285 |
47DAP/reference | 0.84951 | 0.049 |
52DAP/reference | 0.9941 | 0.666 |
57DAP/reference | 0.88232 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92823 | 0.335 |
17DAP/reference | 0.94803 | 0.537 |
27DAP/reference | 1.33568 | 0.467 |
39DAP/reference | 0.91251 | 0.111 |
41DAP/reference | 1.22352 | 0.674 |
42DAP/reference | 1.00114 | 0.816 |
43DAP/reference | 0.95943 | 0.523 |
47DAP/reference | 0.87602 | 0.125 |
52DAP/reference | 0.85474 | 0.167 |
57DAP/reference | 1.21226 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74932 | 0.611 |
26DAP/20DAP | 1.07977 | 0.896 |
34DAP/26DAP | 0.85556 | 0.682 |
51DAP/34DAP | 1.27313 | 0.814 |
52DAP/51DAP | 0.81441 | 1 |
53DAP/52DAP | 0.8284 | 0.186 |
55DAP/53DAP | 1.03919 | 0.876 |
57DAP/55DAP | 1.32473 | 0.935 |
62DAP/57DAP | 1.27807 | 0.002 |
68DAP/62DAP | 1.57732 | 0.885 |
68DAP/14DAP | 1.00164 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.89314 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 5.7228 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.86225 | 0.032 |
Immature Eggplant/Mature Eggplant | 0.29508 | |
Ripe Pepper/Ripe Tomato | 1.32503 | |
Mature Eggplant/Ripe Tomato | 1.81575 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.97746 | 1 |
12-2/M82 | 0.73896 | |
12-4/M82 | 0.81251 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.27466 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.23583 | |
4-3/M82 | 1.09703 | 1 |
5-3/M82 | 0.96228 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.92267 | |
7-1/M82 | 1.25524 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00536 | 1 |
IL2-6/WTpooled | 0.50675 | 0.348 |
IL7-5/WTpooled | 5.69103 | 1 |
IL7-3/WTpooled | 0.38748 | 0.294 |
IL12-4/WTpooled | 2.45726 | 0.516 |
IL1-4/WTpooled | 0.68867 | 0.562 |
WT/WTpooled | 1.01228 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.30529 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12035 | 0.921 |
DC3000/delta hrp 6h | 0.87925 | 0.95 |
DC3000/delta hrp 12h | 0.76441 | 1 |
DC3000/delta hrp 24h | 1.16056 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.20163 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.10945 | 0.449 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.68174 | 0.661 |
Exp 60h | 1.06329 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98604 | 1 |
Var 0h | 0.72613 | 0.457 |
Var 12h I row2-row1 | 1.09137 | 0.613 |
Var 12h NI row2-row1 | 1.09603 | 0.649 |
Var 36h I row2-row1 | 0.87814 | 1 |
Var 36h NI row2-row1 | 0.97688 | 0.791 |
Var 60h I row2-row1 | 0.80945 | 0.582 |
Var 60h NI row2-row1 | 1.01463 | 1 |
Time course 0hI-0hNI | 0.96735 | 0.821 |
Time course 12hI-12hNI | 1.16156 | 0.068 |
Time course 36hI-36hNI | 1.48213 | 0.007 |
Time course 60hI-60hNI | 1.72905 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97939 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.79973 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99569 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0309 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83411 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19481 | 0.307 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.02447 | 1 |
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