Expression of 1-1-7.3.6.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.897740.932
27DAP/17DAP0.915060.819
39DAP/27DAP0.933210.62
41DAP/39DAP0.808740.381
42DAP/41DAP1.134360.978
43DAP/42DAP0.970820.912
47DAP/43DAP1.269630.469
52DAP/47DAP1.033260.702
57DAP/52DAP1.389710.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.707160.029
17DAP/reference0.848350.018
27DAP/reference0.91430.314
39DAP/reference0.930290.315
41DAP/reference0.830080.085
42DAP/reference0.846640.139
43DAP/reference0.846560.028
47DAP/reference0.937520.3
52DAP/reference0.945370.35
57DAP/reference1.016030.984

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.873240.402
27DAP/17DAP1.260320.353
39DAP/27DAP0.966760.754
41DAP/39DAP0.989440.91
42DAP/41DAP1.171610.675
43DAP/42DAP1.028011
47DAP/43DAP0.90060.387
52DAP/47DAP0.886550.575
57DAP/52DAP1.05870.858
57DAP/7DAP1.178780.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954140.445
17DAP/reference1.123191
27DAP/reference1.03290.974
39DAP/reference0.766730.083
41DAP/reference0.828170.06
42DAP/reference0.806550.06
43DAP/reference1.313810.041
47DAP/reference1.028770.915
52DAP/reference0.790580.033
57DAP/reference0.981510.494

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.913280.329
17DAP/reference0.938160.337
27DAP/reference0.869190.093
39DAP/reference0.902210.072
41DAP/reference0.861080.091
42DAP/reference0.836340.061
43DAP/reference0.91010.285
47DAP/reference0.849510.049
52DAP/reference0.99410.666
57DAP/reference0.882320.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.928230.335
17DAP/reference0.948030.537
27DAP/reference1.335680.467
39DAP/reference0.912510.111
41DAP/reference1.223520.674
42DAP/reference1.001140.816
43DAP/reference0.959430.523
47DAP/reference0.876020.125
52DAP/reference0.854740.167
57DAP/reference1.212260.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.749320.611
26DAP/20DAP1.079770.896
34DAP/26DAP0.855560.682
51DAP/34DAP1.273130.814
52DAP/51DAP0.814411
53DAP/52DAP0.82840.186
55DAP/53DAP1.039190.876
57DAP/55DAP1.324730.935
62DAP/57DAP1.278070.002
68DAP/62DAP1.577320.885
68DAP/14DAP1.001641

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.893140.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.72280.058
Mature Green Tomato/Ripe Tomato1.862250.032
Immature Eggplant/Mature Eggplant0.29508
Ripe Pepper/Ripe Tomato1.32503
Mature Eggplant/Ripe Tomato1.81575

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.977461
12-2/M820.73896
12-4/M820.81251
1-3/M82N/AN/A
2-1-1/M821.27466
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.23583
4-3/M821.097031
5-3/M820.96228
6-2/M82N/AN/A
6-3/M820.92267
7-1/M821.25524
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.005361
IL2-6/WTpooled0.506750.348
IL7-5/WTpooled5.691031
IL7-3/WTpooled0.387480.294
IL12-4/WTpooled2.457260.516
IL1-4/WTpooled0.688670.562
WT/WTpooled1.012281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.305290.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.120350.921
DC3000/delta hrp 6h0.879250.95
DC3000/delta hrp 12h0.764411
DC3000/delta hrp 24h1.160560.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.201630.16
DC3000 delta B/DC3000 delta AB1.109450.449

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.681740.661
Exp 60h1.063291

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986041
Var 0h0.726130.457
Var 12h I row2-row11.091370.613
Var 12h NI row2-row11.096030.649
Var 36h I row2-row10.878141
Var 36h NI row2-row10.976880.791
Var 60h I row2-row10.809450.582
Var 60h NI row2-row11.014631
Time course 0hI-0hNI0.967350.821
Time course 12hI-12hNI1.161560.068
Time course 36hI-36hNI1.482130.007
Time course 60hI-60hNI1.729050.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.979390.722
transgenic ySAMdc/azygous control (breaker)0.799730.15
transgenic ySAMdc/azygous control (red)0.995691

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.03090.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.834110.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.194810.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.024471