Expression of 1-1-7.3.7.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11528 | 0.912 |
27DAP/17DAP | 1.57194 | 0.633 |
39DAP/27DAP | 0.84159 | 0.482 |
41DAP/39DAP | 1.09311 | 0.904 |
42DAP/41DAP | 1.29756 | 0.916 |
43DAP/42DAP | 1.0837 | 1 |
47DAP/43DAP | 1.10514 | 0.809 |
52DAP/47DAP | 1.17807 | 0.913 |
57DAP/52DAP | 0.92655 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.732 | 0.027 |
17DAP/reference | 0.85256 | 0.129 |
27DAP/reference | 0.85592 | 0.106 |
39DAP/reference | 0.88017 | 0.298 |
41DAP/reference | 0.81957 | 0.154 |
42DAP/reference | 0.8162 | 0.019 |
43DAP/reference | 0.90751 | 0.211 |
47DAP/reference | 0.93177 | 0.106 |
52DAP/reference | 0.97101 | 0.489 |
57DAP/reference | 1.02506 | 0.952 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82501 | 0.454 |
27DAP/17DAP | 0.98411 | 0.943 |
39DAP/27DAP | 1.12492 | 0.575 |
41DAP/39DAP | 0.74324 | 0.547 |
42DAP/41DAP | 0.77848 | 0.253 |
43DAP/42DAP | 1.20298 | |
47DAP/43DAP | 1.17745 | 0.848 |
52DAP/47DAP | 0.87799 | 0.893 |
57DAP/52DAP | 1.4616 | 0.366 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.6275 | 0.078 |
17DAP/reference | 1.30347 | 0.269 |
27DAP/reference | 1.42802 | 0.02 |
39DAP/reference | 0.89205 | 0.17 |
41DAP/reference | 0.87499 | 0.146 |
42DAP/reference | 0.80427 | 0.053 |
43DAP/reference | 0.86888 | 0.145 |
47DAP/reference | 0.67526 | 0.035 |
52DAP/reference | 1.09745 | 0.491 |
57DAP/reference | 0.95304 | 0.426 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95888 | 0.607 |
17DAP/reference | 0.71267 | 0.022 |
27DAP/reference | 0.8285 | 0.134 |
39DAP/reference | 0.83933 | 0.122 |
41DAP/reference | 0.99445 | 0.615 |
42DAP/reference | 0.82406 | 0.169 |
43DAP/reference | 1.10818 | 1 |
47DAP/reference | 0.68971 | 0.009 |
52DAP/reference | 1.01013 | 1 |
57DAP/reference | 0.93444 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09556 | 0.602 |
17DAP/reference | 1.0959 | 0.804 |
27DAP/reference | 1.24856 | 0.081 |
39DAP/reference | 1.16357 | 0.858 |
41DAP/reference | 1.30413 | 0.012 |
42DAP/reference | 1.27331 | 0.175 |
43DAP/reference | 1.17191 | 0.625 |
47DAP/reference | 0.78429 | 0.072 |
52DAP/reference | 1.49142 | 0.158 |
57DAP/reference | 1.02886 | 0.583 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10037 | 0.966 |
26DAP/20DAP | 1.01439 | 1 |
34DAP/26DAP | 1.37126 | 0.19 |
51DAP/34DAP | 1.18881 | |
52DAP/51DAP | 1.54983 | 0.089 |
53DAP/52DAP | 2.10969 | |
55DAP/53DAP | 0.83413 | 0.746 |
57DAP/55DAP | 1.24054 | |
62DAP/57DAP | 1.43053 | 0.723 |
68DAP/62DAP | 1.33781 | |
68DAP/14DAP | 1.37012 | 0.113 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97158 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 8.86675 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.73669 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96243 | |
IL12-4/WTpooled | 0.6227 | 0.71 |
IL1-4/WTpooled | 1.07344 | 1 |
WT/WTpooled | 0.78649 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86105 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12734 | 0.921 |
DC3000/delta hrp 6h | 0.9547 | 0.95 |
DC3000/delta hrp 12h | 1.25108 | 1 |
DC3000/delta hrp 24h | 0.83307 | 0.131 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1228 | 0.441 |
DC3000 delta B/DC3000 delta AB | 0.98932 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09539 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.78292 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96904 | 1 |
Var 0h | 0.73443 | 0.197 |
Var 12h I row2-row1 | 0.98324 | 0.948 |
Var 12h NI row2-row1 | 0.93974 | 0.82 |
Var 36h I row2-row1 | 1.13665 | 0.908 |
Var 36h NI row2-row1 | 1.19001 | 1 |
Var 60h I row2-row1 | 0.81996 | 0.952 |
Var 60h NI row2-row1 | 0.94739 | 1 |
Time course 0hI-0hNI | 0.89095 | 0.317 |
Time course 12hI-12hNI | 0.93844 | 0.416 |
Time course 36hI-36hNI | 0.8523 | 0.114 |
Time course 60hI-60hNI | 0.45242 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 29.0056 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.43284 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21388 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9314 | 0.143 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.40247 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.90733 | 0.728 |
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