Expression of 1-1-7.3.7.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.115280.912
27DAP/17DAP1.571940.633
39DAP/27DAP0.841590.482
41DAP/39DAP1.093110.904
42DAP/41DAP1.297560.916
43DAP/42DAP1.08371
47DAP/43DAP1.105140.809
52DAP/47DAP1.178070.913
57DAP/52DAP0.926550.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.7320.027
17DAP/reference0.852560.129
27DAP/reference0.855920.106
39DAP/reference0.880170.298
41DAP/reference0.819570.154
42DAP/reference0.81620.019
43DAP/reference0.907510.211
47DAP/reference0.931770.106
52DAP/reference0.971010.489
57DAP/reference1.025060.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.825010.454
27DAP/17DAP0.984110.943
39DAP/27DAP1.124920.575
41DAP/39DAP0.743240.547
42DAP/41DAP0.778480.253
43DAP/42DAP1.20298
47DAP/43DAP1.177450.848
52DAP/47DAP0.877990.893
57DAP/52DAP1.46160.366
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.62750.078
17DAP/reference1.303470.269
27DAP/reference1.428020.02
39DAP/reference0.892050.17
41DAP/reference0.874990.146
42DAP/reference0.804270.053
43DAP/reference0.868880.145
47DAP/reference0.675260.035
52DAP/reference1.097450.491
57DAP/reference0.953040.426

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958880.607
17DAP/reference0.712670.022
27DAP/reference0.82850.134
39DAP/reference0.839330.122
41DAP/reference0.994450.615
42DAP/reference0.824060.169
43DAP/reference1.108181
47DAP/reference0.689710.009
52DAP/reference1.010131
57DAP/reference0.934440.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.095560.602
17DAP/reference1.09590.804
27DAP/reference1.248560.081
39DAP/reference1.163570.858
41DAP/reference1.304130.012
42DAP/reference1.273310.175
43DAP/reference1.171910.625
47DAP/reference0.784290.072
52DAP/reference1.491420.158
57DAP/reference1.028860.583

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.100370.966
26DAP/20DAP1.014391
34DAP/26DAP1.371260.19
51DAP/34DAP1.18881
52DAP/51DAP1.549830.089
53DAP/52DAP2.10969
55DAP/53DAP0.834130.746
57DAP/55DAP1.24054
62DAP/57DAP1.430530.723
68DAP/62DAP1.33781
68DAP/14DAP1.370120.113

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.971580.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato8.86675
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.73669
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.96243
IL12-4/WTpooled0.62270.71
IL1-4/WTpooled1.073441
WT/WTpooled0.786491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.861050.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.127340.921
DC3000/delta hrp 6h0.95470.95
DC3000/delta hrp 12h1.251081
DC3000/delta hrp 24h0.833070.131

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.12280.441
DC3000 delta B/DC3000 delta AB0.989321

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.095391
Exp 36hN/AN/A
Exp 60h0.782920.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.969041
Var 0h0.734430.197
Var 12h I row2-row10.983240.948
Var 12h NI row2-row10.939740.82
Var 36h I row2-row11.136650.908
Var 36h NI row2-row11.190011
Var 60h I row2-row10.819960.952
Var 60h NI row2-row10.947391
Time course 0hI-0hNI0.890950.317
Time course 12hI-12hNI0.938440.416
Time course 36hI-36hNI0.85230.114
Time course 60hI-60hNI0.452420.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)29.00560.798
transgenic ySAMdc/azygous control (breaker)1.432841
transgenic ySAMdc/azygous control (red)1.213880.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.93140.143

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.402470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.907330.728