Expression of 1-1-7.3.7.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985470.911
27DAP/17DAP1.648110.852
39DAP/27DAP0.789860.447
41DAP/39DAP1.392230.535
42DAP/41DAP0.835461
43DAP/42DAP1.605610.823
47DAP/43DAP2.86990.584
52DAP/47DAP0.968190.924
57DAP/52DAP1.066120.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.5177
17DAP/reference0.83942
27DAP/reference2.30287
39DAP/reference0.93036
41DAP/reference0.79466
42DAP/reference1.103040.963
43DAP/reference0.64875
47DAP/reference0.652910.018
52DAP/reference1.16139
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.394110.25
39DAP/27DAP1.243911
41DAP/39DAP0.92236
42DAP/41DAP1.395660.947
43DAP/42DAP1.297660.788
47DAP/43DAP1.12147
52DAP/47DAP0.811570.801
57DAP/52DAPN/AN/A
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.887910.078
17DAP/reference0.906210.035
27DAP/reference0.892750.012
39DAP/reference0.982120.146
41DAP/reference0.996770.589
42DAP/reference0.922290.013
43DAP/reference0.921230.066
47DAP/reference0.98361
52DAP/reference1.012791
57DAP/reference0.982890.494

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.69990.124
17DAP/reference0.720250.26
27DAP/reference1.124850.67
39DAP/referenceN/AN/A
41DAP/reference0.665840.05
42DAP/reference1.521540.899
43DAP/reference0.905120.385
47DAP/reference1.0227
52DAP/reference1.324131
57DAP/reference1.572020.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.887070.065
17DAP/reference1.006831
27DAP/reference0.87160.03
39DAP/reference0.899160.092
41DAP/reference0.924690.119
42DAP/reference0.920670.087
43DAP/reference0.895120.158
47DAP/reference0.63637
52DAP/reference0.79850.101
57DAP/reference1.475690.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.55638
26DAP/20DAP0.32233
34DAP/26DAP0.725550.848
51DAP/34DAP0.943830.856
52DAP/51DAP0.50312
53DAP/52DAP0.854080.75
55DAP/53DAP1.154940.861
57DAP/55DAP0.445010.259
62DAP/57DAP1.471091
68DAP/62DAP1.43157
68DAP/14DAP0.76278

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.47484

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.390730.365
IL2-6/WTpooled1.24440.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.939391
IL12-4/WTpooled0.673580.543
IL1-4/WTpooled1.263940.426
WT/WTpooled0.847591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.29423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.166110.594
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.94092
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A