Expression of 1-1-7.3.7.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13838 | 0.697 |
27DAP/17DAP | 0.73168 | 0.217 |
39DAP/27DAP | 0.86711 | 0.549 |
41DAP/39DAP | 0.76294 | 0.215 |
42DAP/41DAP | 0.85983 | 0.774 |
43DAP/42DAP | 1.17652 | 0.712 |
47DAP/43DAP | 1.20254 | 0.595 |
52DAP/47DAP | 0.82475 | 0.518 |
57DAP/52DAP | 1.03917 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85837 | 0.149 |
17DAP/reference | 0.69339 | 0.012 |
27DAP/reference | 0.83706 | 0.152 |
39DAP/reference | 0.75211 | 0.085 |
41DAP/reference | 0.5592 | 0.01 |
42DAP/reference | 0.80164 | 0.011 |
43DAP/reference | 0.77965 | 0.073 |
47DAP/reference | 0.83167 | 0.055 |
52DAP/reference | 1.04526 | 0.709 |
57DAP/reference | 1.22462 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18492 | 0.482 |
27DAP/17DAP | 0.86177 | 0.724 |
39DAP/27DAP | 0.49059 | 0.028 |
41DAP/39DAP | 1.26327 | 0.439 |
42DAP/41DAP | 1.09222 | 0.601 |
43DAP/42DAP | 0.79865 | 0.031 |
47DAP/43DAP | 0.99076 | 0.954 |
52DAP/47DAP | 0.94755 | 0.837 |
57DAP/52DAP | 0.89947 | 0.507 |
57DAP/7DAP | 0.48887 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47774 | 0.041 |
17DAP/reference | 1.01009 | 1 |
27DAP/reference | 0.8192 | 0.017 |
39DAP/reference | 0.64692 | 0.023 |
41DAP/reference | 0.49586 | 0.011 |
42DAP/reference | 0.44171 | 0.01 |
43DAP/reference | 0.43964 | 0.01 |
47DAP/reference | 0.62981 | 0.057 |
52DAP/reference | 0.68282 | 0.027 |
57DAP/reference | 0.58469 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80727 | 0.032 |
17DAP/reference | 0.78451 | 0.035 |
27DAP/reference | 0.91599 | 0.34 |
39DAP/reference | 0.96656 | 0.442 |
41DAP/reference | 0.99896 | 0.649 |
42DAP/reference | 0.85683 | 0.055 |
43DAP/reference | 0.39472 | 0.002 |
47DAP/reference | 0.64808 | 0.009 |
52DAP/reference | 0.75742 | 0.007 |
57DAP/reference | 0.50176 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.51634 | 0.015 |
17DAP/reference | 1.92603 | 0.115 |
27DAP/reference | 1.61048 | 0.02 |
39DAP/reference | 1.19766 | 0.069 |
41DAP/reference | 1.116 | 0.108 |
42DAP/reference | 0.90691 | 0.361 |
43DAP/reference | 1.04414 | 0.949 |
47DAP/reference | 0.78165 | 0.045 |
52DAP/reference | 0.57656 | 0.049 |
57DAP/reference | 1.75464 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8632 | 0.807 |
26DAP/20DAP | 0.91611 | 1 |
34DAP/26DAP | 1.07195 | 1 |
51DAP/34DAP | 0.81976 | 0.109 |
52DAP/51DAP | 1.18442 | 0.606 |
53DAP/52DAP | 1.13179 | |
55DAP/53DAP | 1.09208 | 0.982 |
57DAP/55DAP | 0.8534 | 0.464 |
62DAP/57DAP | 1.41887 | 0.868 |
68DAP/62DAP | 1.17594 | 0.5 |
68DAP/14DAP | 1.79837 | 0.042 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.41399 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.30971 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.72791 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.50257 | 0.063 |
Ripe Pepper/Ripe Tomato | 5.29704 | 1 |
Mature Eggplant/Ripe Tomato | 9.58888 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.0919 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.02011 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.97277 | 0.487 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.90826 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88496 | 0.243 |
IL2-6/WTpooled | 1.04213 | 1 |
IL7-5/WTpooled | 0.86498 | 1 |
IL7-3/WTpooled | 0.88639 | 1 |
IL12-4/WTpooled | 1.0099 | 1 |
IL1-4/WTpooled | 0.91146 | 0.699 |
WT/WTpooled | 1.12369 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04613 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93491 | 1 |
DC3000/delta hrp 6h | 1.07456 | 1 |
DC3000/delta hrp 12h | 1.31109 | 1 |
DC3000/delta hrp 24h | 0.61122 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.47258 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.47617 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94482 | 1 |
Var 0h | 0.5681 | 0.782 |
Var 12h I row2-row1 | 0.72258 | 0.338 |
Var 12h NI row2-row1 | 0.85208 | 0.627 |
Var 36h I row2-row1 | 0.84012 | 0.805 |
Var 36h NI row2-row1 | 1.29613 | 1 |
Var 60h I row2-row1 | 1.23382 | 0.562 |
Var 60h NI row2-row1 | 1.06309 | 1 |
Time course 0hI-0hNI | 0.96587 | 0.839 |
Time course 12hI-12hNI | 0.97459 | 0.855 |
Time course 36hI-36hNI | 0.81409 | 0.037 |
Time course 60hI-60hNI | 0.16048 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19494 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 4.094 | 0.165 |
transgenic ySAMdc/azygous control (red) | 1.10636 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.63386 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.67584 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 9.04868 | 0.083 |
Manapal/WT (break) | 11.5269 | 0.13 |
Manapal/WT (red) | 4.41061 | 0.142 |
|
|