Expression of 1-1-7.3.7.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.138380.697
27DAP/17DAP0.731680.217
39DAP/27DAP0.867110.549
41DAP/39DAP0.762940.215
42DAP/41DAP0.859830.774
43DAP/42DAP1.176520.712
47DAP/43DAP1.202540.595
52DAP/47DAP0.824750.518
57DAP/52DAP1.039171

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.858370.149
17DAP/reference0.693390.012
27DAP/reference0.837060.152
39DAP/reference0.752110.085
41DAP/reference0.55920.01
42DAP/reference0.801640.011
43DAP/reference0.779650.073
47DAP/reference0.831670.055
52DAP/reference1.045260.709
57DAP/reference1.224620.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.184920.482
27DAP/17DAP0.861770.724
39DAP/27DAP0.490590.028
41DAP/39DAP1.263270.439
42DAP/41DAP1.092220.601
43DAP/42DAP0.798650.031
47DAP/43DAP0.990760.954
52DAP/47DAP0.947550.837
57DAP/52DAP0.899470.507
57DAP/7DAP0.488871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.477740.041
17DAP/reference1.010091
27DAP/reference0.81920.017
39DAP/reference0.646920.023
41DAP/reference0.495860.011
42DAP/reference0.441710.01
43DAP/reference0.439640.01
47DAP/reference0.629810.057
52DAP/reference0.682820.027
57DAP/reference0.584690.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.807270.032
17DAP/reference0.784510.035
27DAP/reference0.915990.34
39DAP/reference0.966560.442
41DAP/reference0.998960.649
42DAP/reference0.856830.055
43DAP/reference0.394720.002
47DAP/reference0.648080.009
52DAP/reference0.757420.007
57DAP/reference0.501760.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.516340.015
17DAP/reference1.926030.115
27DAP/reference1.610480.02
39DAP/reference1.197660.069
41DAP/reference1.1160.108
42DAP/reference0.906910.361
43DAP/reference1.044140.949
47DAP/reference0.781650.045
52DAP/reference0.576560.049
57DAP/reference1.754640.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.86320.807
26DAP/20DAP0.916111
34DAP/26DAP1.071951
51DAP/34DAP0.819760.109
52DAP/51DAP1.184420.606
53DAP/52DAP1.13179
55DAP/53DAP1.092080.982
57DAP/55DAP0.85340.464
62DAP/57DAP1.418870.868
68DAP/62DAP1.175940.5
68DAP/14DAP1.798370.042

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.413990.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.309710.058
Mature Green Tomato/Ripe Tomato2.727910.016
Immature Eggplant/Mature Eggplant0.502570.063
Ripe Pepper/Ripe Tomato5.297041
Mature Eggplant/Ripe Tomato9.588880.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.0919
12-2/M82N/AN/A
12-4/M821.02011
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.972770.487
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.908260.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.884960.243
IL2-6/WTpooled1.042131
IL7-5/WTpooled0.864981
IL7-3/WTpooled0.886391
IL12-4/WTpooled1.00991
IL1-4/WTpooled0.911460.699
WT/WTpooled1.123690.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.046131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.934911
DC3000/delta hrp 6h1.074561
DC3000/delta hrp 12h1.311091
DC3000/delta hrp 24h0.611220.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.472580.023
DC3000 delta B/DC3000 delta AB0.476170.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.944821
Var 0h0.56810.782
Var 12h I row2-row10.722580.338
Var 12h NI row2-row10.852080.627
Var 36h I row2-row10.840120.805
Var 36h NI row2-row11.296131
Var 60h I row2-row11.233820.562
Var 60h NI row2-row11.063091
Time course 0hI-0hNI0.965870.839
Time course 12hI-12hNI0.974590.855
Time course 36hI-36hNI0.814090.037
Time course 60hI-60hNI0.160480.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.194940.654
transgenic ySAMdc/azygous control (breaker)4.0940.165
transgenic ySAMdc/azygous control (red)1.106360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.633860.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.675840.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)9.048680.083
Manapal/WT (break)11.52690.13
Manapal/WT (red)4.410610.142